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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:167.9 nTPM
HPA Brain:94.2 nTPM
GTEx:167.9 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:77.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 88.0
1981 Female, age 72, midline 114.9
2565 Male, age 75, midline 89.9
2194 Female, age 79, both hemispheres 85.2
2816 Male, age 47, midline 75.5
2048 Male, age 55, midline 74.3
Cervical spinal cord, dorsal horn
nTPM: 94.2
2173 Female, age 72, unknown 136.6
2296 Male, age 66, both hemispheres 124.2
2069 Male, age 47, both hemispheres 101.6
2297 Male, age 75, both hemispheres 71.1
1877 Male, age 55, unknown 67.4
2721 Male, age 90, both hemispheres 64.3
Cervical spinal cord, ventral horn
nTPM: 93.9
2098 Female, age 72, unknown 117.8
2480 Male, age 75, both hemispheres 100.3
2809 Male, age 90, both hemispheres 97.9
2068 Male, age 55, unknown 92.0
2295 Male, age 66, both hemispheres 87.3
2820 Female, age 79, both hemispheres 68.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 167.9
Samples: 159

Max nTPM: 292.7
Min nTPM: 66.4
Std nTPM: 37.1
Median nTPM: 168.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 292.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 259.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 247.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 241.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 240.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 238.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 233.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 233.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 228.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 224.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 222.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 220.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 218.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 217.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 215.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 214.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 211.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 211.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 210.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 210.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 209.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 207.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 207.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 207.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 205.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 204.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 203.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 202.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 201.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 201.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 201.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 200.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 200.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 199.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 198.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 197.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 194.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 194.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 194.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 191.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 191.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 190.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 190.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 189.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 188.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 187.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 186.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 183.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 182.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 182.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 181.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 181.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 181.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 181.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 181.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 181.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 181.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 180.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 178.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 178.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 176.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 176.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 176.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 176.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 175.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 172.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 171.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 171.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 170.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 170.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 170.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 170.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 170.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 169.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 169.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 169.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 169.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 168.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 168.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 168.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 168.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 168.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 167.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 166.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 165.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 165.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 164.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 164.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 163.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 163.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 162.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 162.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 161.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 160.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 160.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 159.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 158.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 158.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 158.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 157.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 156.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 155.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 155.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 155.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 154.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 154.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 150.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 150.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 149.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 148.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 148.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 146.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 146.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 146.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 144.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 144.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 141.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 141.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 141.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 140.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 140.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 140.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 139.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 139.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 138.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 138.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 138.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 137.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 137.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 136.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 133.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 133.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 133.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 132.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 130.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 128.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 127.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 126.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 126.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 124.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 123.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 121.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 119.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 118.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 117.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 116.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 110.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 110.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 102.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 101.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 99.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 95.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 92.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 86.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 85.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 66.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 84.2
FF:10181-103D1 60 years, female 99.8
FF:10159-103A6 76 years, female 68.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 75.8
Samples: 4

Max nTPM: 93.4
Min nTPM: 67.3
Sample A Female 68.7
Sample B Female 73.6
Sample C Male 93.4
Sample D Male 67.3
Ventral spinal cord
nTPM: 77.8
Samples: 4

Max nTPM: 84.3
Min nTPM: 68.8
Sample A Female 68.8
Sample B Female 75.9
Sample C Male 82.3
Sample D Male 84.3

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