MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.8 nTPM
HPA Brain:175.0 nTPM
GTEx:86.8 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:630.5 nTPM
Mouse:118.0 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 175.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.6
2586 Male, age 75, left hemisphere 159.7
1827 Male, age 72, unknown 152.8
2411 Female, age 72, unknown 143.5
2666 Male, age 74, left hemisphere 138.2
1833 Male, age 53, unknown 133.6
2219 Male, age 76, both hemispheres 130.5
1870 Female, age 42, unknown 125.1
1830 Male, age 51, unknown 118.1
2828 Female, age 72, unknown 117.3
2019 Male, age 18, unknown 107.5
Dorsal raphe nucleus
nTPM: 151.5
2298 Female, age 72, unknown 184.7
2047 Male, age 72, unknown 169.4
2750 Male, age 76, both hemispheres 145.7
2016 Female, age 72, unknown 130.6
1828 Male, age 53, unknown 127.4
Inferior colliculus
nTPM: 138.8
2097 Female, age 72, unknown 158.0
2849 Male, age 72, unknown 147.9
1890 Male, age 53, unknown 126.9
1848 Female, age 42, unknown 122.5
Median raphe nucleus
nTPM: 175.0
2220 Male, age 76, midline 175.0
Periaquaductal grey, anterior
nTPM: 144.8
1947 Male, age 18, unknown 158.2
1795 Male, age 51, unknown 152.7
2502 Female, age 75, unknown 123.5
Periaquaductal grey, dorsal
nTPM: 147.9
1840 Male, age 53, unknown 183.5
2850 Male, age 76, both hemispheres 147.1
2464 Female, age 72, unknown 131.5
1831 Male, age 72, unknown 129.4
Periaquaductal grey, lateral
nTPM: 128.5
2140 Male, age 76, both hemispheres 139.6
2053 Male, age 18, unknown 124.6
2272 Male, age 74, both hemispheres 121.4
Pretectal area
nTPM: 139.7
2224 Female, age 72, unknown 171.3
2825 Male, age 18, unknown 154.5
1816 Male, age 51, unknown 154.0
1817 Female, age 42, unknown 151.9
2007 Male, age 72, unknown 150.8
2667 Female, age 75, unknown 134.8
1944 Female, age 72, unknown 134.4
1815 Male, age 53, unknown 133.8
2407 Male, age 75, both hemispheres 122.7
2316 Male, age 76, right hemisphere 115.2
2273 Male, age 74, both hemispheres 113.5
Red nucleus
nTPM: 102.3
2584 Male, age 75, left hemisphere 135.7
2588 Male, age 74, left hemisphere 115.3
2725 Female, age 75, unknown 114.3
2785 Male, age 18, unknown 110.7
1821 Female, age 72, unknown 105.1
2227 Male, age 72, unknown 97.5
2769 Male, age 72, unknown 96.2
1954 Female, age 42, unknown 94.8
2823 Male, age 76, right hemisphere 92.5
1904 Male, age 53, unknown 91.5
2503 Female, age 72, unknown 91.1
1865 Male, age 51, unknown 83.0
Substantia nigra
nTPM: 134.3
2665 Male, age 74, both hemispheres 151.4
2241 Male, age 72, unknown 146.2
1916 Female, age 42, unknown 146.1
1941 Male, age 53, unknown 138.0
1851 Male, age 51, unknown 137.4
1889 Female, age 72, unknown 135.4
2583 Male, age 75, right hemisphere 130.4
2590 Female, age 75, unknown 125.5
2699 Male, age 18, unknown 123.5
2409 Female, age 72, unknown 109.3
Superior colliculus
nTPM: 123.4
2664 Male, age 75, both hemispheres 149.8
2668 Female, age 75, unknown 138.3
1839 Male, age 51, unknown 138.1
1796 Male, age 53, unknown 134.6
2087 Female, age 72, unknown 127.7
2261 Male, age 18, unknown 124.7
1895 Male, age 76, right hemisphere 123.3
2587 Male, age 74, left hemisphere 113.9
1913 Female, age 42, unknown 92.9
1995 Male, age 72, unknown 90.6
Ventral tegmental area
nTPM: 136.6
2218 Male, age 76, both hemispheres 141.2
1915 Female, age 42, unknown 140.0
2410 Female, age 72, unknown 139.3
2021 Male, age 53, unknown 138.6
1942 Male, age 51, unknown 135.5
2223 Female, age 72, unknown 125.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.8
Samples: 139

Max nTPM: 193.6
Min nTPM: 44.2
Std nTPM: 28.3
Median nTPM: 83.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 193.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 171.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 156.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 156.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 145.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 138.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 138.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 134.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 134.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 130.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 128.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.6
FF:10158-103A5 76 years, female 69.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 630.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 630.5
Samples: 4

Max nTPM: 878.0
Min nTPM: 266.6
Sample A Female 878.0
Sample B Female 500.5
Sample C Male 877.0
Sample D Male 266.6
Midbrain
nTPM: 607.9
Samples: 4

Max nTPM: 987.7
Min nTPM: 346.7
Sample A Female 346.7
Sample B Female 471.4
Sample C Male 625.8
Sample D Male 987.7
Periaqueductal gray
nTPM: 584.5
Samples: 3

Max nTPM: 772.4
Min nTPM: 464.4
Sample B Female 464.4
Sample C Male 772.4
Sample D Male 516.6
Superior colliculi
nTPM: 583.2
Samples: 4

Max nTPM: 827.9
Min nTPM: 438.9
Sample A Female 827.9
Sample B Female 438.9
Sample C Male 494.3
Sample D Male 571.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 118.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.0
Samples: 4

Max nTPM: 120.7
Min nTPM: 114.9
Sample A Male 115.8
Sample B Male 120.5
Sample C Female 114.9
Sample D Female 120.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
71016617 Antisense, RP_050725_03_A07, Mouse strain C57BL/6J (56 days, male) 4.6
68637575 Antisense, RP_050126_01_B08, Mouse strain C57BL/6J (56 days, male) 4.1

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