We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
BMERB1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • BMERB1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:145.9 nTPM
HPA Brain:114.2 nTPM
GTEx:145.9 nTPM
FANTOM5:172.0 Scaled Tags Per Million
Pig:110.4 nTPM
Mouse:211.4 nTPM
Allen mouse:27.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.2
Sample id Sample description nTPM
Amygdala
nTPM: 84.6
2517 Female, age 94, left hemisphere 96.9
1987 Female, age 91, left hemisphere 91.2
2814 Male, age 76, right hemisphere 79.8
2514 Male, age 75, right hemisphere 78.3
2695 Female, age 67, right hemisphere 76.8
Basal amygdala
nTPM: 114.2
2243 Female, age 91, right hemisphere 155.1
2110 Male, age 80, left hemisphere 126.4
2685 Female, age 94, left hemisphere 123.9
2609 Male, age 75, right hemisphere 99.5
2827 Female, age 67, right hemisphere 91.3
1955 Male, age 76, both hemispheres 89.3
Central amygdala
nTPM: 94.7
2239 Male, age 80, left hemisphere 125.3
2826 Female, age 94, left hemisphere 110.9
2515 Male, age 75, right hemisphere 85.4
2701 Female, age 91, right hemisphere 77.5
1905 Male, age 76, both hemispheres 74.4
Corticomedial amygdala
nTPM: 112.8
2242 Female, age 91, right hemisphere 159.7
2829 Male, age 80, left hemisphere 147.9
2429 Female, age 94, left hemisphere 108.0
2535 Female, age 67, right hemisphere 94.8
2240 Male, age 76, both hemispheres 83.6
2428 Male, age 75, right hemisphere 83.1
Lateral amygdala
nTPM: 87.9
2534 Female, age 94, left hemisphere 122.3
1883 Male, age 76, both hemispheres 89.3
2256 Male, age 80, left hemisphere 87.0
2516 Male, age 75, right hemisphere 80.9
2255 Female, age 91, right hemisphere 78.1
2830 Female, age 67, right hemisphere 69.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 145.9
Samples: 152

Max nTPM: 434.7
Min nTPM: 11.5
Std nTPM: 58.9
Median nTPM: 139.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 434.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 321.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 312.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 275.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 262.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 251.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 235.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 232.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 232.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 230.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 228.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 227.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 226.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 225.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 225.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 217.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 211.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 210.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 209.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 208.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 207.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 205.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 204.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 202.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 200.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 198.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 195.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 194.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 194.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 193.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 192.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 191.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 190.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 188.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 187.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 187.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 186.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 179.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 175.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 174.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 174.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 173.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 172.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 172.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 172.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 171.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 170.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 169.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 168.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 166.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 163.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 160.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 159.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 158.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 158.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 158.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 158.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 158.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 158.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 157.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 156.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 155.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 155.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 152.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 152.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 151.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 149.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 149.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 147.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 146.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 146.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 146.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 144.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 144.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 140.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 140.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 139.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 139.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 139.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 138.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 137.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 136.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 132.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 131.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 131.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 131.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 130.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 128.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 128.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 128.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 126.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 124.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 123.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 123.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 122.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 119.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 119.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 118.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 117.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 115.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 114.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 114.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 114.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 114.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 113.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 107.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 107.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 105.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 105.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 102.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 101.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 99.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 99.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 99.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 94.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 93.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 93.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 92.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 92.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 92.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 92.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 90.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 86.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 86.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 85.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 85.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 84.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 83.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 81.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 79.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 74.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 73.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 68.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 68.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 67.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 55.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 53.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 47.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 46.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 32.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 172.0
FF:10151-102I7 76 years, female 172.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.4
Pig sample Sample description nTPM
Amygdala
nTPM: 110.4
Samples: 4

Max nTPM: 150.8
Min nTPM: 79.8
Sample A Female 150.8
Sample B Female 79.8
Sample C Male 120.4
Sample D Male 90.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 211.4
Samples: 4

Max nTPM: 217.8
Min nTPM: 204.6
Sample A Male 212.4
Sample B Male 204.6
Sample C Female 217.8
Sample D Female 210.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.3
67815971 Antisense, RP_040920_02_E04, Mouse strain C57BL/6J (56 days, male) 27.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org