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MYO1A
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: High
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:301.3 nTPM
HPA:301.3 nTPM
GTEx:106.3 nTPM
FANTOM5:658.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA053490
Endocrine cells Not detected
Enterocytes Not detected
Enterocytes - Microvilli High
Goblet cells Not detected
Paneth cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.3
overview
Male, age 65
Small intestine sample 232
nTPM: 392
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 351.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 177.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 284.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 106.3
Samples: 187

Max nTPM: 525.4
Min nTPM: 0.2
Std nTPM: 115.2
Median nTPM: 53.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 525.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 391.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 390.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 379.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 370.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 355.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 329.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 326.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 315.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 314.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 311.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 307.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 307.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 301.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 292.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 287.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 279.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 276.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 275.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 274.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 273.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 266.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 265.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 262.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 261.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 258.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 255.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 252.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 251.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 242.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 241.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 240.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 239.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 236.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 236.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 234.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 232.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 230.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 228.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 225.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 223.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 223.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 220.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 218.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 213.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 213.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 210.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 203.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 202.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 193.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 185.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 184.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 179.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 173.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 167.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 162.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 161.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 159.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 157.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 154.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 145.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 142.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 137.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 136.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 132.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 125.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 125.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 124.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 119.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 117.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 116.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 116.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 108.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 107.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 97.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 97.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 96.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 96.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 92.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 88.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 88.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 86.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 83.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 83.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 81.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 80.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 80.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 78.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 77.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 69.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 67.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 57.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 54.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 53.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 53.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 47.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 47.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 46.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 45.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 45.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 45.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 44.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 39.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 35.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 34.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 26.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 26.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 26.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 26.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 23.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 23.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 22.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 20.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 19.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 18.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 18.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 17.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 16.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 15.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 15.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 14.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 13.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 13.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 13.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 13.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 12.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 12.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 12.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 12.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 11.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 11.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 11.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 11.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 10.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 10.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 10.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 9.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 9.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 8.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 7.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 6.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 6.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 5.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 5.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 5.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 4.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 4.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 4.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 4.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 4.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 4.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 4.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 3.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3.1
GTEX-1192X-2526-SM-59868 50-59 years, male 3.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 3.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

658.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 658.9
FF:10024-101D6 15,40,85 years, mixed 658.9

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