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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:243.6 nTPM
HPA:243.6 nTPM
GTEx:80.1 nTPM
FANTOM5:310.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB072806
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.6
overview
Male, age 65
Small intestine sample 232
nTPM: 268.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 285.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 216.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 203.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 80.1
Samples: 187

Max nTPM: 259.5
Min nTPM: 0.0
Std nTPM: 78.5
Median nTPM: 53.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 259.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 257.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 255.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 248.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 245.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 242.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 237.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 232.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 230.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 227.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 224.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 221.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 215.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 213.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 212.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 210.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 209.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 209.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 205.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 203.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 203.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 203.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 202.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 200.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 197.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 195.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 192.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 187.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 184.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 183.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 180.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 179.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 177.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 177.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 176.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 164.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 162.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 162.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 160.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 154.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 153.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 150.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 148.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 145.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 144.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 144.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 142.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 139.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 136.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 134.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 133.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 133.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 132.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 132.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 129.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 128.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 124.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 122.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 117.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 116.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 113.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 113.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 112.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 110.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 109.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 107.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 105.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 101.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 100.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 93.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 92.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 90.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 87.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 85.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 80.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 77.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 75.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 74.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 73.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 65.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 65.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 63.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 63.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 61.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 61.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 60.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 59.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 59.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 59.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 58.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 57.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 54.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 53.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 53.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 51.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 50.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 49.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 48.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 45.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 45.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 42.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 41.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 41.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 40.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 39.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 35.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 33.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 33.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 32.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 31.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 30.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 29.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 27.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 26.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 25.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 25.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 23.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 23.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 23.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 23.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 22.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 22.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 21.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 18.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 15.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 15.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 14.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 13.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 13.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 13.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 12.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 12.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 12.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 12.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 11.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 11.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 10.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 10.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 10.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 10.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 8.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 8.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 7.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 6.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 6.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 6.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 6.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 5.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 5.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 5.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 5.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 4.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 4.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 4.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 4.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 4.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 3.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.1
GTEX-1192X-2526-SM-59868 50-59 years, male 2.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

310.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 310.8
FF:10024-101D6 15,40,85 years, mixed 310.8

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