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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:11.2 nTPM
HPA Brain:65.4 nTPM
GTEx:11.2 nTPM
FANTOM5:95.6 Scaled Tags Per Million
Pig:67.1 nTPM
Mouse:32.9 nTPM
Allen mouse:7.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.4
Sample id Sample description nTPM
Amygdala
nTPM: 34.4
2517 Female, age 94, left hemisphere 44.8
1987 Female, age 91, left hemisphere 40.0
2814 Male, age 76, right hemisphere 37.9
2514 Male, age 75, right hemisphere 34.6
2695 Female, age 67, right hemisphere 14.6
Basal amygdala
nTPM: 65.4
2827 Female, age 67, right hemisphere 87.5
2243 Female, age 91, right hemisphere 74.9
2685 Female, age 94, left hemisphere 73.5
2110 Male, age 80, left hemisphere 56.1
2609 Male, age 75, right hemisphere 51.7
1955 Male, age 76, both hemispheres 48.9
Central amygdala
nTPM: 45.9
2239 Male, age 80, left hemisphere 56.4
2826 Female, age 94, left hemisphere 52.3
2701 Female, age 91, right hemisphere 43.0
2515 Male, age 75, right hemisphere 39.4
1905 Male, age 76, both hemispheres 38.3
Corticomedial amygdala
nTPM: 61.7
2535 Female, age 67, right hemisphere 99.1
2242 Female, age 91, right hemisphere 65.9
2829 Male, age 80, left hemisphere 65.4
2429 Female, age 94, left hemisphere 51.2
2240 Male, age 76, both hemispheres 44.6
2428 Male, age 75, right hemisphere 43.9
Lateral amygdala
nTPM: 46.3
2255 Female, age 91, right hemisphere 53.2
2830 Female, age 67, right hemisphere 51.9
2534 Female, age 94, left hemisphere 51.6
2256 Male, age 80, left hemisphere 50.0
1883 Male, age 76, both hemispheres 35.8
2516 Male, age 75, right hemisphere 35.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 11.2
Samples: 152

Max nTPM: 27.8
Min nTPM: 0.2
Std nTPM: 4.9
Median nTPM: 11.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 27.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 21.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 21.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 20.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 20.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 19.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 19.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 19.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 19.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 19.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 19.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 18.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 18.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 17.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 17.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 17.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 17.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 17.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 16.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 16.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 16.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 16.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 16.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 16.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 16.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 16.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 15.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 15.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 15.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 15.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 15.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 15.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 15.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 15.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 14.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 14.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 14.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 14.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 14.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 14.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 14.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 14.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 14.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 13.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 13.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 13.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 13.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 13.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 13.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 13.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 13.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 13.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 13.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 13.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 12.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 12.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 12.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 12.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 12.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 12.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 12.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 12.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 12.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 12.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 12.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 12.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 12.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 12.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 11.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 11.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 11.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 11.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 11.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 11.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 11.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 11.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 11.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 11.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 11.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 10.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 10.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 10.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 10.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 10.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 10.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 10.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 10.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 10.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 10.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 10.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 10.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 9.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 9.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 9.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 9.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 9.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 9.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 9.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 8.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 8.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 8.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 8.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 8.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 8.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 8.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 8.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 8.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 7.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 7.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 7.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 7.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 7.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 7.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 7.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 7.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 7.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 6.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 6.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 6.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 6.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 6.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 6.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 6.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 5.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 5.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 5.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 5.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 5.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 5.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 5.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 4.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 4.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 4.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 4.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 4.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 3.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 3.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 3.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 3.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 0.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 0.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

95.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 95.6
FF:10151-102I7 76 years, female 95.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.1
Pig sample Sample description nTPM
Amygdala
nTPM: 67.1
Samples: 4

Max nTPM: 76.7
Min nTPM: 58.7
Sample A Female 76.7
Sample B Female 58.7
Sample C Male 73.9
Sample D Male 59.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 32.9
Samples: 4

Max nTPM: 34.4
Min nTPM: 31.0
Sample A Male 32.4
Sample B Male 33.8
Sample C Female 34.4
Sample D Female 31.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.7
70305090 Antisense, RP_050609_03_C01, Mouse strain C57BL/6J (56 days, male) 7.7

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