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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.9 nTPM
HPA Brain:76.8 nTPM
GTEx:134.9 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:79.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 39.6
1981 Female, age 72, midline 52.1
2194 Female, age 79, both hemispheres 44.5
2048 Male, age 55, midline 38.5
2816 Male, age 47, midline 35.4
2565 Male, age 75, midline 27.4
Cervical spinal cord, dorsal horn
nTPM: 76.8
2297 Male, age 75, both hemispheres 109.0
2296 Male, age 66, both hemispheres 88.0
2069 Male, age 47, both hemispheres 84.3
2721 Male, age 90, both hemispheres 61.4
1877 Male, age 55, unknown 60.7
2173 Female, age 72, unknown 57.2
Cervical spinal cord, ventral horn
nTPM: 35.7
2480 Male, age 75, both hemispheres 53.9
2068 Male, age 55, unknown 46.2
2820 Female, age 79, both hemispheres 34.0
2295 Male, age 66, both hemispheres 31.9
2098 Female, age 72, unknown 25.2
2809 Male, age 90, both hemispheres 22.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 134.9
Samples: 159

Max nTPM: 313.8
Min nTPM: 31.2
Std nTPM: 42.4
Median nTPM: 129.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 313.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 242.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 232.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 220.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 215.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 212.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 211.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 208.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 202.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 199.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 199.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 195.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 194.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 192.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 192.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 191.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 189.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 185.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 184.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 184.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 182.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 182.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 180.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 178.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 178.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 178.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 176.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 175.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 175.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 173.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 172.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 172.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 168.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 168.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 166.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 163.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 163.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 162.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 162.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 162.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 161.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 158.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 158.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 158.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 157.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 157.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 157.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 156.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 156.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 154.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 153.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 153.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 152.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 152.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 150.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 149.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 149.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 149.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 148.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 148.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 148.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 146.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 144.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 144.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 144.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 144.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 143.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 142.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 141.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 140.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 138.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 138.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 136.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 135.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 132.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 132.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 132.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 130.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 129.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 129.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 128.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 128.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 128.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 125.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 122.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 122.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 122.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 121.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 120.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 120.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 120.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 119.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 118.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 118.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 117.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 117.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 116.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 116.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 116.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 115.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 114.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 114.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 113.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 113.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 112.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 111.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 111.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 110.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 110.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 109.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 108.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 107.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 107.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 107.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 106.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 106.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 105.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 104.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 104.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 104.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 103.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 103.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 101.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 100.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 100.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 99.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 99.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 98.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 97.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 96.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 95.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 95.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 94.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 92.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 91.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 90.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 90.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 89.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 89.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 88.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 88.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 86.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 86.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 85.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 82.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 82.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 79.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 78.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 76.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 75.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 68.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 66.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 65.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 58.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 57.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 34.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 31.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 80.5
FF:10181-103D1 60 years, female 93.3
FF:10159-103A6 76 years, female 67.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 70.7
Samples: 4

Max nTPM: 103.0
Min nTPM: 40.1
Sample A Female 103.0
Sample B Female 59.2
Sample C Male 40.1
Sample D Male 80.5
Ventral spinal cord
nTPM: 79.3
Samples: 4

Max nTPM: 86.2
Min nTPM: 72.9
Sample A Female 80.5
Sample B Female 86.2
Sample C Male 72.9
Sample D Male 77.7

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