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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:159.6 nTPM
FANTOM5:172.3 Scaled Tags Per Million
Pig:67.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA013136Antibody HPA074618
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 159.6
Samples: 246

Max nTPM: 447.0
Min nTPM: 12.2
Std nTPM: 100.9
Median nTPM: 156.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 447.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 431.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 426.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 425.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 417.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 370.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 360.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 359.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 342.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 335.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 328.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 319.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 314.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 313.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 310.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 309.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 309.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 309.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 304.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 304.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 301.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 297.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 296.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 294.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 291.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 291.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 288.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 285.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 284.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 283.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 283.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 279.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 276.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 275.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 272.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 270.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 269.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 269.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 269.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 268.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 268.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 263.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 261.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 260.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 260.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 253.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 249.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 247.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 244.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 242.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 241.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 241.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 240.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 240.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 239.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 239.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 238.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 238.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 237.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 236.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 236.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 234.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 232.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 230.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 230.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 230.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 227.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 227.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 225.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 223.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 223.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 223.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 223.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 222.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 222.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 222.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 221.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 220.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 219.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 217.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 215.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 215.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 215.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 212.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 210.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 206.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 205.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 204.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 203.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 201.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 200.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 200.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 200.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 198.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 198.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 196.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 194.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 194.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 192.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 188.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 186.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 185.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 184.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 184.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 183.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 182.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 182.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 181.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 176.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 175.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 175.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 173.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 169.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 168.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 168.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 167.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 163.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 162.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 160.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 159.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 158.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 158.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 156.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 155.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 154.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 153.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 150.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 150.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 148.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 147.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 147.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 142.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 141.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 140.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 139.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 139.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 137.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 137.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 136.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 133.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 128.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 128.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 127.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 126.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 124.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 124.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 122.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 121.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 121.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 120.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 118.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 116.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 116.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 116.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 116.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 115.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 113.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 109.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 108.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 104.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 104.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 96.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 94.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 91.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 91.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 88.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 88.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 88.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 87.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 84.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 83.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 82.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 81.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 78.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 77.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 75.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 69.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 69.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 69.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 67.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 67.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 65.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 64.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 64.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 64.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 61.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 61.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 61.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 57.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 56.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 56.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 55.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 53.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 53.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 53.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 52.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 52.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 51.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 51.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 49.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 49.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 48.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 47.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 47.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 46.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 45.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 45.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 43.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 43.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 42.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 42.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 41.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 39.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 38.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 35.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 34.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 33.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 33.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 33.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 31.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 31.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 31.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 30.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 30.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 29.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 28.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 26.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 25.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 25.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 24.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 24.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 23.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 21.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 20.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 20.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 19.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 18.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 18.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 17.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 17.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 17.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 15.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 14.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 12.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 172.3
FF:10164-103B2 76 years, female 172.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.7
Pig sample Sample description nTPM
Caudate
nTPM: 67.7
Samples: 4

Max nTPM: 71.9
Min nTPM: 62.9
Sample A Female 68.3
Sample B Female 67.6
Sample C Male 71.9
Sample D Male 62.9

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