MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:114.9 nTPM
HPA Brain:50.2 nTPM
GTEx:114.9 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Pig:122.4 nTPM
Mouse:362.8 nTPM
Allen mouse:22.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.3
2411 Female, age 72, unknown 56.6
2219 Male, age 76, both hemispheres 53.3
1870 Female, age 42, unknown 37.2
1827 Male, age 72, unknown 36.2
1830 Male, age 51, unknown 30.0
1833 Male, age 53, unknown 27.2
2019 Male, age 18, unknown 26.9
2828 Female, age 72, unknown 24.1
2666 Male, age 74, left hemisphere 21.4
2586 Male, age 75, left hemisphere 10.5
Dorsal raphe nucleus
nTPM: 36.6
2298 Female, age 72, unknown 47.2
2750 Male, age 76, both hemispheres 40.0
2047 Male, age 72, unknown 37.6
1828 Male, age 53, unknown 32.8
2016 Female, age 72, unknown 25.4
Inferior colliculus
nTPM: 45.7
2097 Female, age 72, unknown 69.7
1848 Female, age 42, unknown 45.3
2849 Male, age 72, unknown 36.6
1890 Male, age 53, unknown 31.3
Median raphe nucleus
nTPM: 50.2
2220 Male, age 76, midline 50.2
Periaquaductal grey, anterior
nTPM: 30.2
1947 Male, age 18, unknown 32.3
2502 Female, age 75, unknown 32.1
1795 Male, age 51, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 36.0
2464 Female, age 72, unknown 43.4
1840 Male, age 53, unknown 40.2
2850 Male, age 76, both hemispheres 33.2
1831 Male, age 72, unknown 27.2
Periaquaductal grey, lateral
nTPM: 33.2
2272 Male, age 74, both hemispheres 47.5
2053 Male, age 18, unknown 28.3
2140 Male, age 76, both hemispheres 23.8
Pretectal area
nTPM: 39.1
2224 Female, age 72, unknown 61.5
2667 Female, age 75, unknown 46.7
1817 Female, age 42, unknown 46.5
1944 Female, age 72, unknown 46.0
2273 Male, age 74, both hemispheres 41.2
2007 Male, age 72, unknown 38.1
1815 Male, age 53, unknown 37.1
1816 Male, age 51, unknown 36.3
2825 Male, age 18, unknown 27.6
2407 Male, age 75, both hemispheres 26.7
2316 Male, age 76, right hemisphere 22.3
Red nucleus
nTPM: 23.6
1821 Female, age 72, unknown 34.6
2584 Male, age 75, left hemisphere 33.0
1954 Female, age 42, unknown 29.5
2785 Male, age 18, unknown 29.2
1865 Male, age 51, unknown 26.8
2725 Female, age 75, unknown 22.4
1904 Male, age 53, unknown 21.7
2769 Male, age 72, unknown 20.7
2227 Male, age 72, unknown 18.8
2823 Male, age 76, right hemisphere 18.1
2503 Female, age 72, unknown 16.8
2588 Male, age 74, left hemisphere 11.1
Substantia nigra
nTPM: 38.7
2241 Male, age 72, unknown 64.2
1916 Female, age 42, unknown 51.1
1941 Male, age 53, unknown 48.7
2409 Female, age 72, unknown 44.9
1889 Female, age 72, unknown 43.9
1851 Male, age 51, unknown 41.7
2699 Male, age 18, unknown 33.0
2583 Male, age 75, right hemisphere 24.5
2590 Female, age 75, unknown 22.4
2665 Male, age 74, both hemispheres 12.2
Superior colliculus
nTPM: 32.1
1895 Male, age 76, right hemisphere 42.4
2261 Male, age 18, unknown 39.7
2087 Female, age 72, unknown 39.5
2668 Female, age 75, unknown 36.7
1796 Male, age 53, unknown 33.4
1839 Male, age 51, unknown 31.9
2587 Male, age 74, left hemisphere 31.2
1913 Female, age 42, unknown 27.9
1995 Male, age 72, unknown 26.1
2664 Male, age 75, both hemispheres 12.5
Ventral tegmental area
nTPM: 44.5
2410 Female, age 72, unknown 65.5
1915 Female, age 42, unknown 46.5
2021 Male, age 53, unknown 44.3
2218 Male, age 76, both hemispheres 44.1
1942 Male, age 51, unknown 35.0
2223 Female, age 72, unknown 31.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 114.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.9
Samples: 139

Max nTPM: 352.2
Min nTPM: 10.9
Std nTPM: 63.8
Median nTPM: 104.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 352.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 331.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 302.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 261.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 248.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 242.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 235.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 228.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 224.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 217.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 211.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.3
FF:10158-103A5 76 years, female 97.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 122.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.1
Samples: 4

Max nTPM: 134.7
Min nTPM: 27.5
Sample A Female 134.7
Sample B Female 70.2
Sample C Male 120.1
Sample D Male 27.5
Midbrain
nTPM: 118.1
Samples: 4

Max nTPM: 171.6
Min nTPM: 68.8
Sample A Female 68.8
Sample B Female 78.6
Sample C Male 171.6
Sample D Male 153.3
Periaqueductal gray
nTPM: 82.5
Samples: 3

Max nTPM: 103.6
Min nTPM: 70.3
Sample B Female 70.3
Sample C Male 103.6
Sample D Male 73.6
Superior colliculi
nTPM: 122.4
Samples: 4

Max nTPM: 160.5
Min nTPM: 91.8
Sample A Female 136.8
Sample B Female 91.8
Sample C Male 160.5
Sample D Male 100.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 362.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 362.8
Samples: 4

Max nTPM: 382.5
Min nTPM: 349.5
Sample A Male 382.5
Sample B Male 368.7
Sample C Female 349.5
Sample D Female 350.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.9
71608208 Antisense, RP_050927_01_B04, Mouse strain C57BL/6J (56 days, male) 24.3
75773511 Antisense, RP_060530_01_A01, Mouse strain C57BL/6J (56 days, male) 21.4

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