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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:48.7 nTPM
GTEx:48.7 nTPM
FANTOM5:63.6 Scaled Tags Per Million

VAGINA - Annotated protein expression
Pending normal tissue analysis

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007526
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 48.7
Samples: 156

Max nTPM: 271.3
Min nTPM: 0.3
Std nTPM: 42.1
Median nTPM: 37.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 271.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 175.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 168.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 153.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 151.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 140.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 135.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 131.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 130.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 129.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 129.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 128.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 125.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 123.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 104.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 104.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 102.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 100.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 98.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 95.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 95.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 93.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 92.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 92.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 88.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 84.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 84.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 82.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 80.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 78.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 78.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 70.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 69.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 69.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 67.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 66.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 65.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 64.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 64.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 63.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 63.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 63.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 63.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 59.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 59.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 59.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 58.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 56.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 55.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 55.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 53.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 53.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 53.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 52.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 51.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 48.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 48.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 48.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 47.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 47.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 45.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 45.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 45.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 44.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 43.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 43.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 42.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 42.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 42.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 42.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 42.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 41.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 40.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 39.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 39.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 39.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 39.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 37.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 36.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 36.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 36.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 35.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 35.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 35.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 34.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 34.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 34.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 34.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 33.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 32.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 32.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 32.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 32.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 31.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 31.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 31.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 30.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 30.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 28.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 28.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 28.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 28.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 28.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 27.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 26.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 24.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 23.4
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 23.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 23.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 22.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 21.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 21.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 19.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 18.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 18.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 17.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 17.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 17.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 17.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 17.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 16.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 16.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 16.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 16.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 15.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 15.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 15.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 13.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 13.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 13.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 13.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 13.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 12.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 12.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 12.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 10.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 10.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 9.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 9.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 9.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 8.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 7.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 6.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 6.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 6.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 6.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 4.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 4.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 3.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 1.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 0.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 0.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 0.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 63.6
FF:10204-103F6 68 years, female 63.6

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