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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:180.9 nTPM
FANTOM5:207.7 Scaled Tags Per Million
Pig:274.2 nTPM
Mouse:148.4 nTPM
Allen mouse:11.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 146.5
2032 Female, age 42, unknown 176.2
2396 Male, age 61, right hemisphere 138.6
2497 Male, age 66, unknown 124.8
Centromedial thalamic nucleus
nTPM: 167.7
2401 Male, age 76, right hemisphere 218.3
2279 Female, age 85, left hemisphere 117.0
Habenula
nTPM: 169.7
2203 Male, age 61, left hemisphere 228.7
1957 Male, age 80, both hemispheres 221.4
2252 Male, age 62, unknown 119.9
2276 Male, age 66, unknown 108.6
Lateral geniculate body
nTPM: 179.5
2399 Male, age 61, left hemisphere 231.0
2106 Female, age 67, right hemisphere 216.4
1953 Male, age 62, unknown 195.5
2035 Female, age 72, unknown 188.6
2575 Female, age 94, right hemisphere 175.2
2841 Male, age 80, both hemispheres 156.7
2659 Male, age 66, unknown 147.8
2857 Male, age 74, right hemisphere 125.3
Lateral thalamic nuclei
nTPM: 167.0
2765 Female, age 67, both hemispheres 211.5
1903 Male, age 76, left hemisphere 201.5
2573 Female, age 94, left hemisphere 149.0
2577 Male, age 74, both hemispheres 147.8
2661 Female, age 72, unknown 125.2
Medial dorsal thalamic nucleus
nTPM: 157.5
1859 Male, age 76, both hemispheres 226.3
1971 Male, age 61, right hemisphere 225.0
2026 Male, age 62, unknown 182.3
1810 Male, age 48, unknown 173.0
2283 Male, age 80, right hemisphere 168.7
1930 Female, age 42, unknown 159.5
2402 Female, age 67, both hemispheres 141.0
2660 Female, age 72, unknown 140.3
2498 Male, age 66, unknown 139.5
2576 Male, age 74, both hemispheres 136.7
2492 Male, age 75, right hemisphere 124.4
2039 Female, age 72, unknown 116.2
2572 Female, age 94, right hemisphere 114.6
Medial geniculate body
nTPM: 157.9
1811 Female, age 42, unknown 237.2
2207 Male, age 80, right hemisphere 160.8
2049 Male, age 76, both hemispheres 155.4
2217 Female, age 72, unknown 153.2
2571 Male, age 75, right hemisphere 147.1
2657 Male, age 74, right hemisphere 133.8
2650 Female, age 94, left hemisphere 117.5
Nucleus reuniens
nTPM: 137.6
2212 Female, age 67, left hemisphere 147.1
2205 Male, age 80, left hemisphere 133.5
2210 Female, age 85, left hemisphere 132.2
Nucleus rhomboideus
nTPM: 148.4
2206 Male, age 80, both hemispheres 190.9
2213 Female, age 67, left hemisphere 138.2
2280 Female, age 85, left hemisphere 116.1
Posterior thalamic nucleus
nTPM: 133.8
2266 Male, age 76, right hemisphere 203.6
2495 Female, age 67, right hemisphere 114.4
2649 Female, age 94, both hemispheres 110.1
2655 Male, age 74, right hemisphere 107.3
Pulvinar
nTPM: 172.0
2398 Male, age 61, left hemisphere 218.6
2214 Male, age 76, right hemisphere 216.0
1972 Male, age 62, unknown 184.7
1932 Male, age 80, right hemisphere 180.0
2582 Female, age 72, unknown 175.6
2724 Male, age 74, right hemisphere 167.3
1929 Male, age 48, unknown 166.4
1899 Female, age 42, unknown 150.2
2499 Male, age 66, unknown 133.1
2496 Female, age 67, right hemisphere 128.6
Subthalamic nucleus
nTPM: 148.0
2275 Male, age 66, unknown 193.6
2124 Male, age 62, unknown 179.8
2658 Male, age 74, both hemispheres 151.1
2056 Female, age 72, unknown 137.4
2282 Male, age 61, both hemispheres 137.1
2779 Female, age 42, unknown 136.2
2216 Male, age 48, unknown 124.4
2406 Female, age 72, unknown 124.4
Ventral posterolateral thalamic nucleus
nTPM: 169.1
2397 Male, age 61, right hemisphere 192.0
2197 Male, age 80, both hemispheres 182.3
2740 Male, age 76, right hemisphere 181.9
2570 Male, age 75, right hemisphere 175.9
2578 Male, age 74, both hemispheres 148.9
2581 Female, age 72, unknown 133.4
Ventral posteromedial thalamic nucleus
nTPM: 180.9
2202 Male, age 61, left hemisphere 252.2
2127 Male, age 76, right hemisphere 183.1
2758 Male, age 80, both hemispheres 178.3
2653 Male, age 74, both hemispheres 148.3
2281 Male, age 75, right hemisphere 142.5
Ventral thalamic nuclei
nTPM: 169.9
1860 Male, age 76, both hemispheres 246.8
1845 Male, age 48, unknown 178.5
2580 Male, age 66, unknown 178.2
2652 Male, age 74, left hemisphere 169.2
1912 Female, age 42, unknown 166.2
2285 Male, age 62, unknown 159.0
2204 Male, age 80, both hemispheres 148.8
2858 Female, age 72, unknown 148.3
2291 Female, age 72, unknown 134.6
Zona incerta
nTPM: 158.5
2215 Male, age 66, unknown 214.6
2822 Male, age 74, right hemisphere 170.1
2208 Male, age 80, right hemisphere 151.0
2663 Female, age 72, unknown 128.4
2403 Male, age 62, unknown 128.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

207.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 207.7
FF:10154-103A1 76 years, female 207.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

274.2
Pig sample Sample description nTPM
Thalamus
nTPM: 274.2
Samples: 4

Max nTPM: 328.9
Min nTPM: 201.7
Sample A Female 309.2
Sample B Female 201.7
Sample C Male 257.0
Sample D Male 328.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 148.4
Samples: 4

Max nTPM: 163.1
Min nTPM: 131.5
Sample A Male 131.5
Sample B Male 158.7
Sample C Female 140.2
Sample D Female 163.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 11.1
659 Antisense, RP_040324_01_E10, Mouse strain C57BL/6J (56 days, male) 11.1
660 Antisense, RP_040324_01_E10, Mouse strain C57BL/6J (56 days, male) 8.0

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