MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.4 nTPM
HPA Brain:167.9 nTPM
GTEx:69.4 nTPM
FANTOM5:189.7 Scaled Tags Per Million
Pig:301.8 nTPM
Mouse:170.7 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 167.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.0
2019 Male, age 18, unknown 172.5
2586 Male, age 75, left hemisphere 170.6
1870 Female, age 42, unknown 150.3
1833 Male, age 53, unknown 148.9
1827 Male, age 72, unknown 145.8
2411 Female, age 72, unknown 145.5
1830 Male, age 51, unknown 139.7
2666 Male, age 74, left hemisphere 139.5
2828 Female, age 72, unknown 131.3
2219 Male, age 76, both hemispheres 125.6
Dorsal raphe nucleus
nTPM: 120.9
2750 Male, age 76, both hemispheres 159.7
1828 Male, age 53, unknown 119.7
2047 Male, age 72, unknown 113.6
2298 Female, age 72, unknown 109.7
2016 Female, age 72, unknown 102.0
Inferior colliculus
nTPM: 125.7
1848 Female, age 42, unknown 128.7
2849 Male, age 72, unknown 128.0
2097 Female, age 72, unknown 125.0
1890 Male, age 53, unknown 121.2
Median raphe nucleus
nTPM: 162.1
2220 Male, age 76, midline 162.1
Periaquaductal grey, anterior
nTPM: 123.0
2502 Female, age 75, unknown 134.3
1795 Male, age 51, unknown 121.9
1947 Male, age 18, unknown 112.9
Periaquaductal grey, dorsal
nTPM: 124.7
2850 Male, age 76, both hemispheres 149.2
1831 Male, age 72, unknown 127.1
1840 Male, age 53, unknown 114.4
2464 Female, age 72, unknown 108.2
Periaquaductal grey, lateral
nTPM: 130.5
2140 Male, age 76, both hemispheres 142.9
2053 Male, age 18, unknown 126.8
2272 Male, age 74, both hemispheres 122.0
Pretectal area
nTPM: 167.9
1816 Male, age 51, unknown 230.7
1944 Female, age 72, unknown 223.9
1817 Female, age 42, unknown 202.4
1815 Male, age 53, unknown 200.2
2007 Male, age 72, unknown 199.3
2407 Male, age 75, both hemispheres 165.5
2667 Female, age 75, unknown 142.9
2316 Male, age 76, right hemisphere 130.8
2224 Female, age 72, unknown 118.6
2825 Male, age 18, unknown 117.7
2273 Male, age 74, both hemispheres 114.8
Red nucleus
nTPM: 153.8
2785 Male, age 18, unknown 180.2
1821 Female, age 72, unknown 170.5
2725 Female, age 75, unknown 167.4
1865 Male, age 51, unknown 163.1
2588 Male, age 74, left hemisphere 152.2
2584 Male, age 75, left hemisphere 147.5
2227 Male, age 72, unknown 146.9
2769 Male, age 72, unknown 145.6
2823 Male, age 76, right hemisphere 144.6
1904 Male, age 53, unknown 144.0
2503 Female, age 72, unknown 142.3
1954 Female, age 42, unknown 141.5
Substantia nigra
nTPM: 154.4
1889 Female, age 72, unknown 190.1
1941 Male, age 53, unknown 175.6
1916 Female, age 42, unknown 172.0
2583 Male, age 75, right hemisphere 167.4
1851 Male, age 51, unknown 158.8
2409 Female, age 72, unknown 145.9
2699 Male, age 18, unknown 143.7
2241 Male, age 72, unknown 142.6
2590 Female, age 75, unknown 137.4
2665 Male, age 74, both hemispheres 111.0
Superior colliculus
nTPM: 154.1
2261 Male, age 18, unknown 180.6
2087 Female, age 72, unknown 179.1
1913 Female, age 42, unknown 173.7
2668 Female, age 75, unknown 161.7
1796 Male, age 53, unknown 155.9
2587 Male, age 74, left hemisphere 155.8
1995 Male, age 72, unknown 148.1
1895 Male, age 76, right hemisphere 134.9
1839 Male, age 51, unknown 127.3
2664 Male, age 75, both hemispheres 123.9
Ventral tegmental area
nTPM: 151.8
2223 Female, age 72, unknown 183.9
2410 Female, age 72, unknown 176.8
2218 Male, age 76, both hemispheres 176.4
1915 Female, age 42, unknown 132.6
2021 Male, age 53, unknown 120.9
1942 Male, age 51, unknown 120.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 69.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.4
Samples: 139

Max nTPM: 137.5
Min nTPM: 27.1
Std nTPM: 19.9
Median nTPM: 65.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 137.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 137.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 120.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 117.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 114.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 110.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 108.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 107.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 102.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 102.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 99.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 189.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 189.7
FF:10158-103A5 76 years, female 189.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 301.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 225.1
Samples: 4

Max nTPM: 271.6
Min nTPM: 153.7
Sample A Female 253.3
Sample B Female 153.7
Sample C Male 221.6
Sample D Male 271.6
Midbrain
nTPM: 301.9
Samples: 4

Max nTPM: 495.6
Min nTPM: 193.3
Sample A Female 495.6
Sample B Female 196.2
Sample C Male 322.4
Sample D Male 193.3
Periaqueductal gray
nTPM: 176.5
Samples: 3

Max nTPM: 180.6
Min nTPM: 174.0
Sample B Female 175.0
Sample C Male 180.6
Sample D Male 174.0
Superior colliculi
nTPM: 227.9
Samples: 4

Max nTPM: 288.8
Min nTPM: 129.7
Sample A Female 228.4
Sample B Female 129.7
Sample C Male 288.8
Sample D Male 264.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 170.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 170.7
Samples: 4

Max nTPM: 177.9
Min nTPM: 158.9
Sample A Male 158.9
Sample B Male 177.3
Sample C Female 177.9
Sample D Female 168.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
659 Antisense, RP_040324_01_E10, Mouse strain C57BL/6J (56 days, male) 10.0
660 Antisense, RP_040324_01_E10, Mouse strain C57BL/6J (56 days, male) 7.4

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