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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
152.1
nTPM
GTEx:
152.1
nTPM
FANTOM5:
41.8
Scaled Tags Per Million
Mouse:
373.6
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA043381
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
152.1
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 152.1
Samples: 105
Max nTPM: 271.0
Min nTPM: 61.5
Std nTPM: 43.9
Median nTPM:
163_1
78 years, male
271.0
292_1
71 years, male
270.2
425_1
59 years, female
249.6
246_1
77 years, male
237.5
177_1
74 years, male
236.4
405_1
91 years, male
233.4
321_1
62 years, female
230.4
386_1
76 years, male
223.6
379_1
60 years, male
217.5
254_1
77 years, female
206.9
348_1
84 years, male
205.7
389_1
86 years, female
205.1
351_1
91 years, male
204.5
517_1
88 years, male
202.8
335_1
73 years, female
198.0
349_1
83 years, male
194.9
404_1
82 years, female
194.8
318_1
68 years, male
193.1
352_1
62 years, male
193.0
6_1
73 years, female
192.7
18_1
88 years, male
186.6
251_1
78 years, male
184.0
9_1
66 years, female
183.1
149_1
88 years, male
182.2
414_1
84 years, female
179.8
145_1
84 years, male
179.2
406_1
79 years, male
179.1
350_1
84 years, female
177.7
189_1
76 years, male
176.3
518_1
75 years, female
175.3
264_1
73 years, female
173.8
503_1
68 years, male
172.9
468_1
89 years, male
172.7
466_1
57 years, female
170.4
355_1
70 years, female
168.8
480_1
63 years, male
168.8
139_1
64 years, female
167.0
81_1
67 years, male
166.2
4_1
88 years, female
166.0
229_1
69 years, female
164.4
377_1
82 years, female
163.9
266_1
85 years, male
163.5
353_1
82 years, female
162.9
375_1
74 years, female
161.6
415_1
77 years, female
159.7
17_1
71 years, male
157.1
243_1
75 years, male
156.8
265_1
87 years, male
155.5
322_1
76 years, male
151.5
315_1
62 years, female
151.2
286_1
68 years, female
151.1
319_1
81 years, male
149.9
115_1
83 years, male
149.5
316_1
62 years, male
148.9
217_1
76 years, male
148.8
153_1
70 years, female
148.3
526_1
61 years, male
148.1
43_1
64 years, female
146.4
354_1
81 years, female
145.9
291_1
76 years, male
145.3
320_1
89 years, female
143.2
162_1
79 years, female
140.5
396_1
62 years, male
140.5
384_1
83 years, male
140.1
501_1
88 years, male
139.5
376_1
75 years, female
138.5
324_1
76 years, male
134.7
237_1
82 years, male
133.7
311_1
78 years, male
133.7
356_1
87 years, female
133.5
447_1
81 years, male
131.3
173_1
67 years, male
128.2
172_1
72 years, female
127.2
317_1
60 years, male
126.8
109_1
81 years, female
124.1
293_1
68 years, female
123.8
126_1
63 years, male
123.4
347_1
72 years, male
122.9
142_1
61 years, female
121.9
413_1
59 years, female
121.7
120_1
70 years, female
121.5
137_1
83 years, male
117.4
506_1
65 years, male
117.2
394_1
75 years, female
116.1
99_1
64 years, male
116.0
2_1
77 years, female
110.3
495_1
57 years, female
109.5
295_1
61 years, female
104.7
35_1
74 years, female
103.7
288_1
66 years, female
100.7
499_1
55 years, female
99.7
452_1
88 years, female
99.2
32_1
67 years, male
97.1
314_1
67 years, male
96.5
308_1
70 years, female
96.1
218_1
71 years, female
96.0
89_1
63 years, male
94.2
313_1
79 years, female
94.2
117_1
61 years, male
93.4
41_1
94 years, female
88.3
490_1
67 years, female
85.2
119_1
70 years, female
73.3
307_1
66 years, female
67.8
491_1
89 years, female
65.6
42_1
85 years, male
61.5
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
