MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.4 nTPM
HPA Brain:152.5 nTPM
GTEx:53.4 nTPM
FANTOM5:241.1 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:30.3 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 152.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.5
2586 Male, age 75, left hemisphere 191.6
1833 Male, age 53, unknown 139.1
2828 Female, age 72, unknown 138.8
1830 Male, age 51, unknown 136.3
2019 Male, age 18, unknown 135.2
2666 Male, age 74, left hemisphere 128.7
2411 Female, age 72, unknown 118.8
1827 Male, age 72, unknown 110.9
1870 Female, age 42, unknown 108.3
2219 Male, age 76, both hemispheres 87.4
Dorsal raphe nucleus
nTPM: 98.1
2750 Male, age 76, both hemispheres 130.1
1828 Male, age 53, unknown 108.1
2016 Female, age 72, unknown 94.2
2047 Male, age 72, unknown 86.2
2298 Female, age 72, unknown 71.9
Inferior colliculus
nTPM: 86.2
2849 Male, age 72, unknown 92.5
1890 Male, age 53, unknown 91.6
1848 Female, age 42, unknown 87.6
2097 Female, age 72, unknown 73.2
Median raphe nucleus
nTPM: 76.2
2220 Male, age 76, midline 76.2
Periaquaductal grey, anterior
nTPM: 96.5
2502 Female, age 75, unknown 109.1
1795 Male, age 51, unknown 92.9
1947 Male, age 18, unknown 87.6
Periaquaductal grey, dorsal
nTPM: 77.6
2464 Female, age 72, unknown 96.8
1831 Male, age 72, unknown 86.1
1840 Male, age 53, unknown 70.3
2850 Male, age 76, both hemispheres 57.0
Periaquaductal grey, lateral
nTPM: 84.5
2053 Male, age 18, unknown 96.6
2272 Male, age 74, both hemispheres 88.3
2140 Male, age 76, both hemispheres 68.7
Pretectal area
nTPM: 105.9
2407 Male, age 75, both hemispheres 141.4
2316 Male, age 76, right hemisphere 124.1
1815 Male, age 53, unknown 122.4
1816 Male, age 51, unknown 114.1
2007 Male, age 72, unknown 109.2
1817 Female, age 42, unknown 108.8
1944 Female, age 72, unknown 105.8
2667 Female, age 75, unknown 95.6
2825 Male, age 18, unknown 95.3
2224 Female, age 72, unknown 75.3
2273 Male, age 74, both hemispheres 73.4
Red nucleus
nTPM: 152.5
2584 Male, age 75, left hemisphere 186.4
2823 Male, age 76, right hemisphere 182.9
1904 Male, age 53, unknown 168.1
2227 Male, age 72, unknown 154.4
2588 Male, age 74, left hemisphere 152.3
2769 Male, age 72, unknown 152.0
2785 Male, age 18, unknown 151.6
1865 Male, age 51, unknown 146.1
2503 Female, age 72, unknown 140.4
2725 Female, age 75, unknown 137.1
1821 Female, age 72, unknown 131.2
1954 Female, age 42, unknown 127.6
Substantia nigra
nTPM: 108.1
2583 Male, age 75, right hemisphere 172.7
2590 Female, age 75, unknown 114.9
1851 Male, age 51, unknown 113.5
2699 Male, age 18, unknown 109.8
1889 Female, age 72, unknown 103.3
2409 Female, age 72, unknown 102.6
1916 Female, age 42, unknown 99.5
2665 Male, age 74, both hemispheres 93.9
1941 Male, age 53, unknown 87.7
2241 Male, age 72, unknown 83.2
Superior colliculus
nTPM: 123.3
1995 Male, age 72, unknown 151.9
1913 Female, age 42, unknown 147.8
2664 Male, age 75, both hemispheres 145.2
1895 Male, age 76, right hemisphere 120.4
2668 Female, age 75, unknown 119.5
2261 Male, age 18, unknown 114.9
1796 Male, age 53, unknown 111.2
2087 Female, age 72, unknown 111.0
1839 Male, age 51, unknown 107.5
2587 Male, age 74, left hemisphere 103.4
Ventral tegmental area
nTPM: 106.5
2223 Female, age 72, unknown 135.5
2410 Female, age 72, unknown 119.4
1942 Male, age 51, unknown 102.1
1915 Female, age 42, unknown 99.1
2218 Male, age 76, both hemispheres 94.6
2021 Male, age 53, unknown 88.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.4
Samples: 139

Max nTPM: 162.6
Min nTPM: 24.0
Std nTPM: 19.9
Median nTPM: 49.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 162.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 145.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 118.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 110.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 109.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 88.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 87.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 84.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 80.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 79.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 78.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 241.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 241.1
FF:10158-103A5 76 years, female 241.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.3
Samples: 4

Max nTPM: 51.0
Min nTPM: 31.5
Sample A Female 46.9
Sample B Female 31.5
Sample C Male 47.7
Sample D Male 51.0
Midbrain
nTPM: 42.9
Samples: 4

Max nTPM: 54.4
Min nTPM: 38.9
Sample A Female 54.4
Sample B Female 39.3
Sample C Male 39.1
Sample D Male 38.9
Periaqueductal gray
nTPM: 36.8
Samples: 3

Max nTPM: 37.5
Min nTPM: 35.6
Sample B Female 37.5
Sample C Male 37.2
Sample D Male 35.6
Superior colliculi
nTPM: 37.4
Samples: 4

Max nTPM: 44.2
Min nTPM: 30.3
Sample A Female 44.2
Sample B Female 30.3
Sample C Male 33.9
Sample D Male 41.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 32.8
Min nTPM: 27.5
Sample A Male 32.8
Sample B Male 27.5
Sample C Female 29.5
Sample D Female 31.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
75826580 Antisense, RP_060601_01_B10, Mouse strain C57BL/6J (56 days, male) 1.7

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