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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:170.4 nTPM
HPA Brain:268.1 nTPM
GTEx:170.4 nTPM
FANTOM5:130.1 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:5.7 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.1
Sample id Sample description nTPM
Amygdala
nTPM: 193.9
2814 Male, age 76, right hemisphere 276.8
2695 Female, age 67, right hemisphere 199.8
2517 Female, age 94, left hemisphere 171.5
2514 Male, age 75, right hemisphere 165.1
1987 Female, age 91, left hemisphere 156.4
Basal amygdala
nTPM: 202.4
2827 Female, age 67, right hemisphere 341.0
2685 Female, age 94, left hemisphere 284.5
2110 Male, age 80, left hemisphere 176.6
1955 Male, age 76, both hemispheres 166.3
2609 Male, age 75, right hemisphere 128.3
2243 Female, age 91, right hemisphere 117.8
Central amygdala
nTPM: 214.8
2701 Female, age 91, right hemisphere 281.0
1905 Male, age 76, both hemispheres 268.7
2239 Male, age 80, left hemisphere 217.2
2826 Female, age 94, left hemisphere 157.6
2515 Male, age 75, right hemisphere 149.3
Corticomedial amygdala
nTPM: 138.1
2535 Female, age 67, right hemisphere 210.8
2429 Female, age 94, left hemisphere 198.6
2428 Male, age 75, right hemisphere 123.5
2829 Male, age 80, left hemisphere 120.1
2240 Male, age 76, both hemispheres 119.6
2242 Female, age 91, right hemisphere 56.2
Lateral amygdala
nTPM: 268.1
2830 Female, age 67, right hemisphere 416.2
2256 Male, age 80, left hemisphere 284.5
2255 Female, age 91, right hemisphere 276.8
2516 Male, age 75, right hemisphere 228.7
2534 Female, age 94, left hemisphere 209.6
1883 Male, age 76, both hemispheres 193.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 170.4
Samples: 152

Max nTPM: 550.2
Min nTPM: 5.9
Std nTPM: 106.9
Median nTPM: 153.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 550.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 499.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 496.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 483.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 432.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 414.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 372.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 371.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 340.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 339.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 319.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 305.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 305.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 304.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 300.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 290.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 283.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 279.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 279.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 275.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 275.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 270.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 269.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 269.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 266.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 263.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 262.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 261.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 257.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 256.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 256.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 253.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 250.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 248.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 246.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 246.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 243.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 243.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 240.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 238.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 236.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 236.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 235.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 232.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 227.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 227.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 223.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 222.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 219.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 216.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 214.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 203.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 202.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 201.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 197.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 194.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 191.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 189.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 189.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 186.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 184.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 183.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 181.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 180.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 179.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 179.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 172.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 170.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 167.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 164.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 163.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 163.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 161.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 155.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 155.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 155.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 152.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 145.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 144.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 141.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 140.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 137.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 136.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 134.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 134.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 134.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 132.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 132.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 131.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 130.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 130.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 129.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 127.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 126.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 124.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 120.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 120.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 119.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 116.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 114.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 113.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 112.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 111.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 108.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 107.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 107.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 105.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 104.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 104.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 101.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 101.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 96.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 94.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 93.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 91.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 87.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 85.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 85.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 82.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 82.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 81.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 80.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 79.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 76.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 71.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 64.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 62.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 56.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 53.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 51.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 48.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 47.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 43.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 43.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 40.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 36.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 33.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 29.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 29.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 26.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 26.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 25.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 23.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 22.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 21.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 15.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 14.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 11.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 11.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 130.1
FF:10151-102I7 76 years, female 130.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.7
Pig sample Sample description nTPM
Amygdala
nTPM: 3.7
Samples: 4

Max nTPM: 5.5
Min nTPM: 2.5
Sample A Female 3.1
Sample B Female 5.5
Sample C Male 3.6
Sample D Male 2.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 5.7
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.4
Sample A Male 5.1
Sample B Male 6.3
Sample C Female 7.1
Sample D Female 4.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
69540733 Antisense, RP_050426_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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