MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:259.3 nTPM
HPA Brain:476.3 nTPM
GTEx:259.3 nTPM
FANTOM5:303.5 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:10.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 476.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 359.7
1830 Male, age 51, unknown 487.7
1833 Male, age 53, unknown 438.3
2411 Female, age 72, unknown 435.0
2019 Male, age 18, unknown 373.7
1870 Female, age 42, unknown 369.1
2586 Male, age 75, left hemisphere 327.8
2666 Male, age 74, left hemisphere 319.0
2828 Female, age 72, unknown 300.8
2219 Male, age 76, both hemispheres 278.5
1827 Male, age 72, unknown 266.9
Dorsal raphe nucleus
nTPM: 260.2
2750 Male, age 76, both hemispheres 476.3
2016 Female, age 72, unknown 255.7
1828 Male, age 53, unknown 243.1
2047 Male, age 72, unknown 176.0
2298 Female, age 72, unknown 149.9
Inferior colliculus
nTPM: 250.6
2849 Male, age 72, unknown 340.0
1848 Female, age 42, unknown 245.8
1890 Male, age 53, unknown 236.2
2097 Female, age 72, unknown 180.3
Median raphe nucleus
nTPM: 217.9
2220 Male, age 76, midline 217.9
Periaquaductal grey, anterior
nTPM: 217.1
1947 Male, age 18, unknown 248.9
1795 Male, age 51, unknown 218.1
2502 Female, age 75, unknown 184.2
Periaquaductal grey, dorsal
nTPM: 199.3
2464 Female, age 72, unknown 352.1
1831 Male, age 72, unknown 187.1
2850 Male, age 76, both hemispheres 131.8
1840 Male, age 53, unknown 126.1
Periaquaductal grey, lateral
nTPM: 233.8
2272 Male, age 74, both hemispheres 292.5
2053 Male, age 18, unknown 250.6
2140 Male, age 76, both hemispheres 158.3
Pretectal area
nTPM: 242.0
2316 Male, age 76, right hemisphere 452.9
2407 Male, age 75, both hemispheres 361.8
1815 Male, age 53, unknown 324.3
2825 Male, age 18, unknown 272.6
1817 Female, age 42, unknown 213.6
2224 Female, age 72, unknown 201.8
2007 Male, age 72, unknown 198.0
2273 Male, age 74, both hemispheres 197.1
2667 Female, age 75, unknown 186.0
1816 Male, age 51, unknown 129.8
1944 Female, age 72, unknown 124.5
Red nucleus
nTPM: 476.3
2823 Male, age 76, right hemisphere 708.9
1904 Male, age 53, unknown 537.4
2588 Male, age 74, left hemisphere 535.0
1865 Male, age 51, unknown 532.7
2769 Male, age 72, unknown 531.6
2227 Male, age 72, unknown 521.5
2503 Female, age 72, unknown 482.7
1821 Female, age 72, unknown 454.5
2785 Male, age 18, unknown 437.3
1954 Female, age 42, unknown 340.0
2584 Male, age 75, left hemisphere 331.0
2725 Female, age 75, unknown 303.4
Substantia nigra
nTPM: 243.5
2590 Female, age 75, unknown 368.2
2583 Male, age 75, right hemisphere 346.9
2409 Female, age 72, unknown 332.0
2699 Male, age 18, unknown 264.7
1851 Male, age 51, unknown 235.9
1889 Female, age 72, unknown 224.5
1941 Male, age 53, unknown 189.9
2665 Male, age 74, both hemispheres 187.6
2241 Male, age 72, unknown 181.0
1916 Female, age 42, unknown 104.1
Superior colliculus
nTPM: 321.6
1913 Female, age 42, unknown 460.6
1995 Male, age 72, unknown 423.8
1895 Male, age 76, right hemisphere 418.8
2668 Female, age 75, unknown 407.6
1839 Male, age 51, unknown 357.1
2587 Male, age 74, left hemisphere 329.1
1796 Male, age 53, unknown 242.4
2664 Male, age 75, both hemispheres 226.9
2087 Female, age 72, unknown 180.3
2261 Male, age 18, unknown 169.5
Ventral tegmental area
nTPM: 256.4
2410 Female, age 72, unknown 336.7
2223 Female, age 72, unknown 317.6
2021 Male, age 53, unknown 266.6
1942 Male, age 51, unknown 221.9
2218 Male, age 76, both hemispheres 214.4
1915 Female, age 42, unknown 181.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 259.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 259.3
Samples: 139

Max nTPM: 1043.8
Min nTPM: 25.2
Std nTPM: 171.0
Median nTPM: 222.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1043.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 865.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 815.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 773.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 636.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 576.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 571.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 569.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 533.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 502.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 494.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 303.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 303.5
FF:10158-103A5 76 years, female 303.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.6
Samples: 4

Max nTPM: 23.2
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 10.6
Sample C Male 11.0
Sample D Male 23.2
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.7
Sample A Female 13.1
Sample B Female 13.8
Sample C Male 7.7
Sample D Male 13.3
Periaqueductal gray
nTPM: 10.0
Samples: 3

Max nTPM: 10.9
Min nTPM: 8.6
Sample B Female 10.9
Sample C Male 8.6
Sample D Male 10.6
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 14.5
Min nTPM: 5.5
Sample A Female 9.9
Sample B Female 5.5
Sample C Male 11.4
Sample D Male 14.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.0
Min nTPM: 9.3
Sample A Male 9.3
Sample B Male 11.0
Sample C Female 10.7
Sample D Female 10.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69540733 Antisense, RP_050426_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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