MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:169.1 nTPM
HPA Brain:743.1 nTPM
GTEx:169.1 nTPM
FANTOM5:965.1 Scaled Tags Per Million
Pig:368.5 nTPM
Mouse:133.8 nTPM
Allen mouse:15.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 743.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 649.5
2828 Female, age 72, unknown 769.5
1870 Female, age 42, unknown 760.2
2411 Female, age 72, unknown 722.8
1833 Male, age 53, unknown 712.2
2586 Male, age 75, left hemisphere 693.1
1830 Male, age 51, unknown 676.9
2019 Male, age 18, unknown 636.8
1827 Male, age 72, unknown 566.9
2219 Male, age 76, both hemispheres 516.2
2666 Male, age 74, left hemisphere 440.6
Dorsal raphe nucleus
nTPM: 613.0
2750 Male, age 76, both hemispheres 733.2
2016 Female, age 72, unknown 667.9
1828 Male, age 53, unknown 573.8
2298 Female, age 72, unknown 568.2
2047 Male, age 72, unknown 522.1
Inferior colliculus
nTPM: 541.2
2097 Female, age 72, unknown 571.9
1848 Female, age 42, unknown 561.6
1890 Male, age 53, unknown 522.3
2849 Male, age 72, unknown 509.1
Median raphe nucleus
nTPM: 456.8
2220 Male, age 76, midline 456.8
Periaquaductal grey, anterior
nTPM: 574.3
2502 Female, age 75, unknown 683.5
1795 Male, age 51, unknown 542.4
1947 Male, age 18, unknown 497.0
Periaquaductal grey, dorsal
nTPM: 497.5
2464 Female, age 72, unknown 570.0
1831 Male, age 72, unknown 522.3
1840 Male, age 53, unknown 468.5
2850 Male, age 76, both hemispheres 429.4
Periaquaductal grey, lateral
nTPM: 536.9
2053 Male, age 18, unknown 633.2
2140 Male, age 76, both hemispheres 501.2
2272 Male, age 74, both hemispheres 476.2
Pretectal area
nTPM: 579.5
2316 Male, age 76, right hemisphere 712.8
2667 Female, age 75, unknown 710.5
2273 Male, age 74, both hemispheres 650.5
1815 Male, age 53, unknown 625.5
2407 Male, age 75, both hemispheres 581.1
1817 Female, age 42, unknown 562.6
2825 Male, age 18, unknown 547.3
2224 Female, age 72, unknown 535.2
1944 Female, age 72, unknown 515.2
2007 Male, age 72, unknown 483.0
1816 Male, age 51, unknown 450.7
Red nucleus
nTPM: 743.1
1904 Male, age 53, unknown 871.0
1821 Female, age 72, unknown 857.1
2227 Male, age 72, unknown 851.5
2769 Male, age 72, unknown 846.9
2503 Female, age 72, unknown 806.8
2823 Male, age 76, right hemisphere 799.4
1865 Male, age 51, unknown 790.1
1954 Female, age 42, unknown 784.0
2785 Male, age 18, unknown 767.6
2588 Male, age 74, left hemisphere 588.1
2725 Female, age 75, unknown 512.8
2584 Male, age 75, left hemisphere 441.8
Substantia nigra
nTPM: 526.4
1851 Male, age 51, unknown 638.4
2699 Male, age 18, unknown 590.2
2409 Female, age 72, unknown 556.7
1916 Female, age 42, unknown 544.5
1889 Female, age 72, unknown 540.2
2583 Male, age 75, right hemisphere 531.8
2590 Female, age 75, unknown 521.0
1941 Male, age 53, unknown 481.1
2241 Male, age 72, unknown 444.0
2665 Male, age 74, both hemispheres 416.1
Superior colliculus
nTPM: 663.9
1995 Male, age 72, unknown 889.1
1913 Female, age 42, unknown 881.2
2664 Male, age 75, both hemispheres 700.6
2668 Female, age 75, unknown 626.1
1796 Male, age 53, unknown 625.9
1839 Male, age 51, unknown 621.6
1895 Male, age 76, right hemisphere 604.8
2587 Male, age 74, left hemisphere 584.6
2261 Male, age 18, unknown 557.7
2087 Female, age 72, unknown 547.3
Ventral tegmental area
nTPM: 576.9
2410 Female, age 72, unknown 714.5
1915 Female, age 42, unknown 592.0
2223 Female, age 72, unknown 576.5
1942 Male, age 51, unknown 574.3
2021 Male, age 53, unknown 519.1
2218 Male, age 76, both hemispheres 485.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 169.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.1
Samples: 139

Max nTPM: 597.9
Min nTPM: 58.4
Std nTPM: 74.6
Median nTPM: 149.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 597.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 448.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 442.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 368.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 346.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 336.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 311.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 306.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 275.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 264.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 255.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 965.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 965.1
FF:10158-103A5 76 years, female 965.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 368.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 368.4
Samples: 4

Max nTPM: 509.3
Min nTPM: 271.4
Sample A Female 372.6
Sample B Female 271.4
Sample C Male 320.1
Sample D Male 509.3
Midbrain
nTPM: 368.5
Samples: 4

Max nTPM: 502.8
Min nTPM: 284.8
Sample A Female 502.8
Sample B Female 397.5
Sample C Male 288.9
Sample D Male 284.8
Periaqueductal gray
nTPM: 303.7
Samples: 3

Max nTPM: 361.3
Min nTPM: 262.1
Sample B Female 361.3
Sample C Male 262.1
Sample D Male 287.7
Superior colliculi
nTPM: 348.3
Samples: 4

Max nTPM: 422.2
Min nTPM: 203.8
Sample A Female 422.2
Sample B Female 203.8
Sample C Male 346.7
Sample D Male 420.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 133.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 133.8
Samples: 4

Max nTPM: 136.5
Min nTPM: 131.6
Sample A Male 136.5
Sample B Male 131.6
Sample C Female 133.5
Sample D Female 133.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.3
71836881 Antisense, RP_051017_02_E11, Mouse strain C57BL/6J (56 days, male) 19.0
68633038 Antisense, RP_050125_02_C10, Mouse strain C57BL/6J (56 days, male) 11.7

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