MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA Brain:36.4 nTPM
GTEx:34.3 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:31.7 nTPM
Mouse:125.2 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.3
2019 Male, age 18, unknown 38.2
2411 Female, age 72, unknown 34.4
2219 Male, age 76, both hemispheres 32.7
1870 Female, age 42, unknown 32.3
1830 Male, age 51, unknown 31.9
1833 Male, age 53, unknown 30.8
1827 Male, age 72, unknown 30.3
2828 Female, age 72, unknown 30.3
2586 Male, age 75, left hemisphere 28.5
2666 Male, age 74, left hemisphere 23.7
Dorsal raphe nucleus
nTPM: 32.6
2750 Male, age 76, both hemispheres 35.5
1828 Male, age 53, unknown 33.3
2016 Female, age 72, unknown 32.6
2298 Female, age 72, unknown 32.3
2047 Male, age 72, unknown 29.4
Inferior colliculus
nTPM: 34.6
2097 Female, age 72, unknown 36.2
1890 Male, age 53, unknown 35.8
1848 Female, age 42, unknown 33.1
2849 Male, age 72, unknown 33.1
Median raphe nucleus
nTPM: 31.0
2220 Male, age 76, midline 31.0
Periaquaductal grey, anterior
nTPM: 29.4
1947 Male, age 18, unknown 33.9
2502 Female, age 75, unknown 27.3
1795 Male, age 51, unknown 26.9
Periaquaductal grey, dorsal
nTPM: 31.4
1831 Male, age 72, unknown 33.1
2850 Male, age 76, both hemispheres 31.7
2464 Female, age 72, unknown 31.3
1840 Male, age 53, unknown 29.6
Periaquaductal grey, lateral
nTPM: 30.9
2272 Male, age 74, both hemispheres 34.1
2053 Male, age 18, unknown 30.2
2140 Male, age 76, both hemispheres 28.4
Pretectal area
nTPM: 33.7
1817 Female, age 42, unknown 37.2
1944 Female, age 72, unknown 37.1
2007 Male, age 72, unknown 36.8
2407 Male, age 75, both hemispheres 34.6
2316 Male, age 76, right hemisphere 34.1
2667 Female, age 75, unknown 33.5
1816 Male, age 51, unknown 32.9
2273 Male, age 74, both hemispheres 32.9
1815 Male, age 53, unknown 32.2
2224 Female, age 72, unknown 31.3
2825 Male, age 18, unknown 27.9
Red nucleus
nTPM: 36.4
1821 Female, age 72, unknown 45.0
1865 Male, age 51, unknown 40.9
2823 Male, age 76, right hemisphere 40.6
1954 Female, age 42, unknown 39.1
2503 Female, age 72, unknown 38.5
2725 Female, age 75, unknown 37.6
2785 Male, age 18, unknown 37.2
2227 Male, age 72, unknown 36.0
1904 Male, age 53, unknown 35.2
2769 Male, age 72, unknown 33.0
2588 Male, age 74, left hemisphere 27.0
2584 Male, age 75, left hemisphere 26.1
Substantia nigra
nTPM: 36.4
2241 Male, age 72, unknown 45.5
1941 Male, age 53, unknown 42.6
1916 Female, age 42, unknown 40.0
1889 Female, age 72, unknown 37.6
2409 Female, age 72, unknown 37.3
1851 Male, age 51, unknown 36.9
2699 Male, age 18, unknown 36.4
2590 Female, age 75, unknown 31.5
2583 Male, age 75, right hemisphere 30.8
2665 Male, age 74, both hemispheres 24.9
Superior colliculus
nTPM: 31.2
2587 Male, age 74, left hemisphere 38.8
1895 Male, age 76, right hemisphere 38.1
1913 Female, age 42, unknown 37.2
2668 Female, age 75, unknown 35.9
1796 Male, age 53, unknown 30.1
2087 Female, age 72, unknown 28.9
1839 Male, age 51, unknown 28.6
1995 Male, age 72, unknown 26.9
2261 Male, age 18, unknown 25.2
2664 Male, age 75, both hemispheres 22.3
Ventral tegmental area
nTPM: 33.0
1915 Female, age 42, unknown 35.2
2218 Male, age 76, both hemispheres 33.7
2410 Female, age 72, unknown 33.1
2223 Female, age 72, unknown 32.9
1942 Male, age 51, unknown 32.7
2021 Male, age 53, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.3
Samples: 139

Max nTPM: 73.5
Min nTPM: 16.8
Std nTPM: 6.9
Median nTPM: 34.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 45.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 45.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 44.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 43.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.7
FF:10158-103A5 76 years, female 85.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 23.8
Sample A Female 37.1
Sample B Female 23.8
Sample C Male 31.6
Sample D Male 28.1
Midbrain
nTPM: 31.7
Samples: 4

Max nTPM: 41.7
Min nTPM: 25.6
Sample A Female 41.7
Sample B Female 31.9
Sample C Male 27.6
Sample D Male 25.6
Periaqueductal gray
nTPM: 29.0
Samples: 3

Max nTPM: 29.9
Min nTPM: 27.7
Sample B Female 29.3
Sample C Male 29.9
Sample D Male 27.7
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 34.7
Min nTPM: 21.9
Sample A Female 34.7
Sample B Female 21.9
Sample C Male 33.3
Sample D Male 29.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 125.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.2
Samples: 4

Max nTPM: 128.6
Min nTPM: 122.7
Sample A Male 122.7
Sample B Male 128.6
Sample C Female 126.0
Sample D Female 123.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
69028557 Antisense, RP_050316_01_E09, Mouse strain C57BL/6J (56 days, male) 5.4

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