We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MIDN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MIDN
BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:20.2 nTPM
HPA Brain:50.0 nTPM
GTEx:20.2 nTPM
FANTOM5:73.2 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:18.0 nTPM
Allen mouse:5.9 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042018Antibody HPA049432
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.6
1781 Male, age 74, unknown 79.1
2289 Male, age 61, right hemisphere 40.1
1854 Male, age 80, left hemisphere 38.7
2481 Female, age 94, left hemisphere 37.4
2290 Female, age 72, unknown 32.9
2846 Female, age 79, unknown 31.8
1857 Female, age 85, left hemisphere 30.6
2288 Male, age 75, left hemisphere 18.5
Globus pallidus, externus
nTPM: 50.0
2567 Female, age 72, unknown 59.4
1996 Male, age 80, right hemisphere 55.5
2646 Male, age 61, right hemisphere 52.6
2772 Female, age 79, unknown 46.2
2395 Male, age 75, both hemispheres 36.4
Globus pallidus, internus
nTPM: 44.6
2566 Female, age 72, unknown 56.9
2037 Male, age 80, right hemisphere 50.9
2111 Female, age 85, right hemisphere 46.4
1818 Male, age 74, unknown 42.2
2287 Male, age 75, right hemisphere 41.1
2778 Female, age 91, both hemispheres 38.6
2483 Female, age 94, right hemisphere 36.0
Nucleus accumbens
nTPM: 32.5
2732 Male, age 80, right hemisphere 53.4
2698 Female, age 72, unknown 40.0
1806 Female, age 85, left hemisphere 36.1
1783 Male, age 74, unknown 31.7
2391 Female, age 94, left hemisphere 26.8
1856 Female, age 91, right hemisphere 25.6
2824 Male, age 61, right hemisphere 24.9
2286 Male, age 75, left hemisphere 21.4
Nucleus basalis of Meynert
nTPM: 37.8
2569 Male, age 61, both hemispheres 56.6
2821 Male, age 75, both hemispheres 33.6
2484 Female, age 94, left hemisphere 31.4
2393 Male, age 80, right hemisphere 29.8
Nucleus of the diagonal band
nTPM: 32.2
1979 Male, age 74, unknown 46.5
1812 Female, age 91, both hemispheres 32.4
2195 Female, age 85, both hemispheres 29.4
2775 Male, age 80, right hemisphere 28.3
2029 Male, age 61, right hemisphere 24.3
Putamen
nTPM: 30.7
2489 Female, age 72, unknown 40.4
2647 Male, age 75, left hemisphere 33.3
2482 Female, age 94, left hemisphere 30.9
1829 Male, age 74, unknown 29.7
1838 Male, age 80, right hemisphere 27.9
2466 Female, age 79, unknown 26.6
1937 Female, age 91, right hemisphere 26.3
Septal nuclei
nTPM: 40.7
2394 Male, age 61, left hemisphere 53.3
2199 Male, age 80, right hemisphere 51.3
1960 Male, age 74, unknown 40.1
2031 Female, age 72, unknown 36.6
2059 Female, age 85, both hemispheres 35.8
2629 Female, age 94, right hemisphere 35.1
2009 Female, age 91, both hemispheres 32.4
Stria terminalis, bed nucleus
nTPM: 32.2
2201 Male, age 74, unknown 37.7
1974 Female, age 91, both hemispheres 30.3
2486 Female, age 94, both hemispheres 28.5

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.7
Samples: 246

Max nTPM: 66.3
Min nTPM: 4.8
Std nTPM: 11.0
Median nTPM: 16.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 62.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 57.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 57.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 51.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 51.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 49.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 48.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 46.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 45.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 45.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 43.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 42.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 42.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 41.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 41.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 41.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 40.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 40.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 40.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 39.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 39.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 35.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 35.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 35.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 34.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 32.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 32.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 31.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 31.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 30.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 29.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 29.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 29.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 28.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 27.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 26.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 26.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 26.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 26.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 26.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 25.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 24.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 24.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 24.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 23.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 23.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 23.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 23.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 23.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 22.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 22.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 22.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 22.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 22.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 21.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 21.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 21.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 21.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 21.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 21.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 21.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 21.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 21.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 21.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 20.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 20.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 20.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 20.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 20.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 20.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 20.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 20.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 19.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 19.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 19.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 19.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 19.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 19.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 18.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 18.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 18.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 18.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 18.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 18.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 18.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 18.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 18.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 18.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 18.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 18.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 18.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 18.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 17.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 17.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 17.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 17.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 17.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 17.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 17.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 17.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 17.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 17.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 17.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 17.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 17.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 17.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 17.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 17.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 17.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 17.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 16.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 16.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 16.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 16.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 16.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 16.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 16.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 16.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 16.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 16.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 16.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 16.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 16.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 16.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 16.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 16.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 16.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 15.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 15.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 15.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 15.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 15.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 15.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 15.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 15.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 15.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 15.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 14.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 14.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 14.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 14.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 14.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 14.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 14.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 14.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 14.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 14.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 14.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 14.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 14.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 13.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 13.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 13.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 13.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 13.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 13.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 13.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 13.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 13.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 13.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 13.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 13.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 13.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 13.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 12.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 12.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 12.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 12.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 12.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 12.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 12.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 12.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 12.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 11.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 11.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 11.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 11.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 11.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 11.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 11.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 11.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 11.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 11.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 11.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 11.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 10.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 10.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 10.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 10.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 10.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 10.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 10.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 10.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 10.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 10.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 10.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 10.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 10.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 10.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 9.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 9.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 9.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 9.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 9.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 9.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 9.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 9.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 9.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 9.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 9.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 8.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 8.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 8.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 8.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 8.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 8.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 8.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 8.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 8.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 8.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 8.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 8.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 8.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 8.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 7.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 7.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 7.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 7.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 7.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 7.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 7.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 7.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 7.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 7.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 7.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 7.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 6.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 6.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 6.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 6.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 6.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 6.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 6.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 4.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.5
Samples: 246

Max nTPM: 63.4
Min nTPM: 4.9
Std nTPM: 11.2
Median nTPM: 14.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 63.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 60.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 56.0
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 53.5
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 53.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 50.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 50.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 50.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 49.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 47.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 45.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 43.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 42.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 42.1
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 39.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 39.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 38.9
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 38.3
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 38.1
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 37.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 37.5
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 36.8
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 36.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 35.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 34.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 34.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 34.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 34.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 33.3
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 33.0
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 32.6
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 32.4
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 30.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 30.6
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 30.2
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 29.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 29.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 28.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 28.4
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 28.4
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 28.1
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 27.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 27.3
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 27.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 27.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 27.1
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 26.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 25.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 24.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 24.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 24.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 24.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 24.3
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 24.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 23.7
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 23.6
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 23.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 23.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 23.2
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 23.2
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 23.2
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 22.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 22.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 22.1
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 22.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 22.1
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 21.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 21.8
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 21.7
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 21.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 21.4
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 21.3
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 21.3
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 20.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 20.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 20.5
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 20.5
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 20.3
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 20.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 20.0
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 19.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 19.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 19.5
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 19.2
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 19.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 19.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 19.1
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 19.0
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 19.0
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 18.9
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 18.6
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 18.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 18.6
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 18.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 18.0
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 17.9
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 17.8
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 17.7
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 17.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 17.6
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 17.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 17.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 17.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 17.0
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 16.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 16.8
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 16.7
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 16.6
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 16.2
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 16.2
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 15.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 15.9
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 15.8
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 15.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 15.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 15.5
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 15.5
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 15.5
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 15.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 15.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 14.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 14.8
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 14.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 14.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 14.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 14.5
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 14.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 14.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 14.0
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 13.8
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 13.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 13.6
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 13.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 13.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 13.5
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 13.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 13.1
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 12.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 12.7
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 12.6
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 12.5
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 12.4
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 12.4
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 12.3
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 12.2
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 12.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 12.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 12.2
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 12.1
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 12.0
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 12.0
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 12.0
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 12.0
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 12.0
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 11.9
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 11.9
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 11.9
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 11.9
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 11.8
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 11.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 11.8
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 11.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 11.7
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 11.6
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 11.6
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 11.6
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 11.5
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 11.5
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 11.4
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 11.1
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 11.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 11.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 11.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 11.0
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 11.0
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 11.0
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 10.9
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 10.9
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 10.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 10.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 10.8
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 10.7
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 10.7
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 10.5
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 10.5
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 10.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 10.5
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 10.5
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 10.5
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 10.4
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 10.4
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 10.4
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 10.3
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 10.3
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 10.2
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 10.2
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 10.2
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 10.2
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 10.1
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 10.0
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 10.0
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 9.9
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 9.9
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 9.9
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 9.7
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 9.7
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 9.7
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 9.6
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 9.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 9.5
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 9.4
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 9.4
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 9.3
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 9.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 9.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 9.1
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 9.0
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 8.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 8.7
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 8.6
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 8.6
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 8.4
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 8.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 8.3
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 8.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 8.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 8.2
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 8.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 8.0
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 7.7
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 7.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 7.5
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 7.5
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 7.5
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 7.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 7.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 7.3
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 7.2
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 6.9
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 6.8
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 6.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 6.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 6.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 5.6
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 5.5
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 4.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 20.2
Samples: 205

Max nTPM: 80.8
Min nTPM: 4.7
Std nTPM: 11.7
Median nTPM: 16.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 80.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 66.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 57.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 55.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 54.9
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 54.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 52.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 47.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 45.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 42.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 42.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 41.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 41.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 41.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 40.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 39.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 38.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 38.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 37.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 37.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 36.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 34.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 34.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 34.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 33.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 33.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 33.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 32.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 31.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 31.3
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 31.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 31.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 31.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 30.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 29.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 29.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 29.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 28.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 28.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 28.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 28.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 27.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 27.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 26.6
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 25.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 25.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 25.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 25.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 24.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 24.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 23.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 23.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 23.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 23.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 23.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 22.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 22.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 22.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 22.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 22.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 22.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 21.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 21.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 21.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 21.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 21.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 21.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 21.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 21.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 21.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 21.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 21.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 20.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 20.6
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 20.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 20.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 19.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 19.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 19.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 19.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 19.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 19.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 19.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 19.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 19.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 18.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 18.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 18.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 18.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 18.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 18.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 18.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 18.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 18.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 18.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 17.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 17.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 17.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 17.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 17.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 17.1
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 16.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 16.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 16.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 16.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 16.5
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 16.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 16.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 16.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 16.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 16.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 16.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 16.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 16.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 15.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 15.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 15.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 15.4
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 15.3
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 15.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 14.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 14.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 14.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 14.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 14.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 14.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 14.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 14.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 14.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 14.1
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 14.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 14.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 14.0
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 14.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 14.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 13.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 13.9
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 13.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 13.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 13.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 13.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 13.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 13.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 13.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 13.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 13.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 13.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 12.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 12.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 12.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 12.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 12.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 12.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 12.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 12.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 12.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 12.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 12.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 12.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 12.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 12.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 11.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 11.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 11.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 11.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 11.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 11.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 10.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 10.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 10.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 10.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 10.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 10.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 9.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 9.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 9.9
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 9.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 9.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 9.7
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 9.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 9.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 9.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 9.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 9.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 9.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 9.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 9.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 9.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 9.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 8.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 8.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 8.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 8.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 8.6
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 8.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 8.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 8.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 8.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 7.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 7.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 7.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 7.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 7.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 7.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 4.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

73.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.7
FF:10164-103B2 76 years, female 47.7
Nucleus accumbens
Scaled Tags Per Million: 46.8
FF:10037-101F1 23-56 years, mixed 46.8
Putamen
Scaled Tags Per Million: 72.3
FF:10176-103C5 60 years, female 72.3
Globus pallidus
Scaled Tags Per Million: 73.2
FF:10175-103C4 60 years, female 90.2
FF:10161-103A8 76 years, female 56.1

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.6
Pig sample Sample description nTPM
Caudate
nTPM: 37.1
Samples: 4

Max nTPM: 41.5
Min nTPM: 33.7
Sample A Female 33.7
Sample B Female 41.5
Sample C Male 36.8
Sample D Male 36.4
Putamen
nTPM: 37.5
Samples: 4

Max nTPM: 45.0
Min nTPM: 31.8
Sample A Female 38.3
Sample B Female 34.7
Sample C Male 31.8
Sample D Male 45.0
Septum
nTPM: 38.5
Samples: 4

Max nTPM: 43.4
Min nTPM: 32.3
Sample A Female 37.2
Sample B Female 32.3
Sample C Male 43.4
Sample D Male 41.2
Ventral pallidum
nTPM: 36.2
Samples: 4

Max nTPM: 47.4
Min nTPM: 31.3
Sample A Female 31.6
Sample B Female 31.3
Sample C Male 47.4
Sample D Male 34.3

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.4
Samples: 4

Max nTPM: 20.9
Min nTPM: 11.3
Sample A Male 16.2
Sample B Male 20.9
Sample C Female 11.3
Sample D Female 13.3
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.4
Sample A Male 16.6
Sample B Male 20.5
Sample C Female 16.4
Sample D Female 18.4
Ventral forebrain
nTPM: 15.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.5
Sample A Male 16.3
Sample B Male 17.5
Sample C Female 14.9
Sample D Female 14.5

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.9
71670739 Antisense, RP_050614_04_E10, Mouse strain C57BL/6J (56 days, male) 5.9
70473921 Antisense, RP_050614_04_E10, Mouse strain C57BL/6J (56 days, male) 4.7
Pallidum
Expression energy: 3.7
71670739 Antisense, RP_050614_04_E10, Mouse strain C57BL/6J (56 days, male) 3.7
70473921 Antisense, RP_050614_04_E10, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org