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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2009.4 nTPM
HPA:932.3 nTPM
GTEx:2009.4 nTPM
FANTOM5:214.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051702
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

932.3
overview
Male, age 65
Small intestine sample 232
nTPM: 1179.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 984.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 816.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 748

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2009.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2009.4
Samples: 187

Max nTPM: 4323.1
Min nTPM: 786.6
Std nTPM: 711.9
Median nTPM: 1868.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 4323.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4248.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 3973.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3951.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3840.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3688.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3640.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3637.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3551.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3436.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3358.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 3310.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3289.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 3124.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3097.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3072.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2969.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2963.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2959.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2947.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2945.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2944.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2938.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2926.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2874.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2869.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2868.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2771.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2750.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2724.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2680.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2630.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2607.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2599.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2545.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2524.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2508.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2501.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2465.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2455.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2452.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2451.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2440.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2433.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2415.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2402.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2400.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2396.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2391.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2389.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2386.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2375.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2375.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2350.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2346.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2344.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2330.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2318.0
GTEX-1192X-2526-SM-59868 50-59 years, male 2313.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2303.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2284.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2278.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2265.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2261.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2216.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2186.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2162.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2161.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2146.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2108.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2107.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 2101.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2099.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2087.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2085.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2081.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2073.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2025.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2017.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2017.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2016.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1980.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1979.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1978.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1968.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1940.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1933.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1902.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1892.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1892.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1889.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1874.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1874.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1868.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1867.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1853.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1833.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1821.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1817.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1815.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1813.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1810.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1801.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1793.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1782.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1780.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1766.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1761.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1753.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1749.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1725.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1720.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1711.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1695.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1669.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1648.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1641.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1624.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1600.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1598.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1596.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1595.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1581.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1561.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1550.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1546.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1545.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1543.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1537.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1537.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1534.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1530.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1530.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1505.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1501.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1499.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1498.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1495.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1476.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1466.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1447.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1445.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1443.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1440.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1438.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 1432.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1428.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1417.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1411.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1410.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1408.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1406.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1388.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1384.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1375.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1366.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1360.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1339.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1332.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1331.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1326.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1326.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1305.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1299.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1277.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1259.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1243.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1229.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1209.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1202.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1186.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1182.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1176.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1171.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1152.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1146.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1141.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1103.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1094.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1062.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1051.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1050.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1010.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 947.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 924.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 905.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 786.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

214.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 214.3
FF:10024-101D6 15,40,85 years, mixed 214.3

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