MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:325.3 nTPM
HPA Brain:74.9 nTPM
GTEx:325.3 nTPM
FANTOM5:153.3 Scaled Tags Per Million
Pig:162.3 nTPM
Mouse:126.1 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.9
2586 Male, age 75, left hemisphere 117.8
2828 Female, age 72, unknown 97.1
2411 Female, age 72, unknown 81.5
1870 Female, age 42, unknown 70.4
1827 Male, age 72, unknown 68.7
1830 Male, age 51, unknown 62.5
1833 Male, age 53, unknown 59.8
2019 Male, age 18, unknown 57.0
2666 Male, age 74, left hemisphere 49.8
2219 Male, age 76, both hemispheres 44.1
Dorsal raphe nucleus
nTPM: 73.7
2298 Female, age 72, unknown 77.3
2750 Male, age 76, both hemispheres 75.5
2047 Male, age 72, unknown 74.8
2016 Female, age 72, unknown 70.8
1828 Male, age 53, unknown 70.1
Inferior colliculus
nTPM: 60.6
2097 Female, age 72, unknown 70.5
1848 Female, age 42, unknown 60.8
1890 Male, age 53, unknown 60.2
2849 Male, age 72, unknown 50.8
Median raphe nucleus
nTPM: 45.2
2220 Male, age 76, midline 45.2
Periaquaductal grey, anterior
nTPM: 67.9
1947 Male, age 18, unknown 71.6
2502 Female, age 75, unknown 67.8
1795 Male, age 51, unknown 64.4
Periaquaductal grey, dorsal
nTPM: 55.2
1840 Male, age 53, unknown 71.4
2464 Female, age 72, unknown 55.5
2850 Male, age 76, both hemispheres 50.9
1831 Male, age 72, unknown 42.9
Periaquaductal grey, lateral
nTPM: 51.6
2053 Male, age 18, unknown 73.7
2140 Male, age 76, both hemispheres 52.8
2272 Male, age 74, both hemispheres 28.1
Pretectal area
nTPM: 64.7
2407 Male, age 75, both hemispheres 95.1
2316 Male, age 76, right hemisphere 74.1
2825 Male, age 18, unknown 70.9
2667 Female, age 75, unknown 70.8
2224 Female, age 72, unknown 64.9
1817 Female, age 42, unknown 63.4
1815 Male, age 53, unknown 61.1
1816 Male, age 51, unknown 60.4
2273 Male, age 74, both hemispheres 57.1
2007 Male, age 72, unknown 50.5
1944 Female, age 72, unknown 43.2
Red nucleus
nTPM: 74.9
1904 Male, age 53, unknown 91.8
2769 Male, age 72, unknown 90.7
2227 Male, age 72, unknown 90.1
1821 Female, age 72, unknown 83.3
1954 Female, age 42, unknown 82.2
2503 Female, age 72, unknown 78.9
2588 Male, age 74, left hemisphere 78.8
1865 Male, age 51, unknown 73.5
2823 Male, age 76, right hemisphere 68.8
2725 Female, age 75, unknown 61.6
2584 Male, age 75, left hemisphere 50.8
2785 Male, age 18, unknown 48.0
Substantia nigra
nTPM: 71.2
2583 Male, age 75, right hemisphere 91.1
1851 Male, age 51, unknown 83.7
1916 Female, age 42, unknown 81.6
2241 Male, age 72, unknown 76.1
2699 Male, age 18, unknown 72.3
2590 Female, age 75, unknown 70.3
2665 Male, age 74, both hemispheres 68.2
1889 Female, age 72, unknown 61.1
2409 Female, age 72, unknown 60.7
1941 Male, age 53, unknown 47.1
Superior colliculus
nTPM: 69.0
2664 Male, age 75, both hemispheres 121.5
1995 Male, age 72, unknown 74.6
2668 Female, age 75, unknown 71.6
1796 Male, age 53, unknown 66.3
2261 Male, age 18, unknown 65.4
2087 Female, age 72, unknown 64.1
2587 Male, age 74, left hemisphere 59.6
1839 Male, age 51, unknown 59.1
1895 Male, age 76, right hemisphere 54.3
1913 Female, age 42, unknown 54.0
Ventral tegmental area
nTPM: 61.1
1915 Female, age 42, unknown 72.5
1942 Male, age 51, unknown 69.0
2021 Male, age 53, unknown 68.4
2410 Female, age 72, unknown 57.3
2218 Male, age 76, both hemispheres 54.7
2223 Female, age 72, unknown 44.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 325.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 325.3
Samples: 139

Max nTPM: 1049.7
Min nTPM: 40.0
Std nTPM: 170.8
Median nTPM: 286.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1049.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 926.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 887.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 813.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 745.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 725.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 698.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 657.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 639.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 607.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 581.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 153.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.3
FF:10158-103A5 76 years, female 153.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 162.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 162.3
Samples: 4

Max nTPM: 216.7
Min nTPM: 117.9
Sample A Female 144.9
Sample B Female 117.9
Sample C Male 169.7
Sample D Male 216.7
Midbrain
nTPM: 156.1
Samples: 4

Max nTPM: 180.8
Min nTPM: 140.7
Sample A Female 160.2
Sample B Female 180.8
Sample C Male 140.7
Sample D Male 142.5
Periaqueductal gray
nTPM: 150.3
Samples: 3

Max nTPM: 162.5
Min nTPM: 133.5
Sample B Female 162.5
Sample C Male 154.8
Sample D Male 133.5
Superior colliculi
nTPM: 128.3
Samples: 4

Max nTPM: 161.5
Min nTPM: 67.1
Sample A Female 141.3
Sample B Female 67.1
Sample C Male 143.3
Sample D Male 161.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 126.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.1
Samples: 4

Max nTPM: 138.8
Min nTPM: 109.9
Sample A Male 138.8
Sample B Male 109.9
Sample C Female 128.5
Sample D Female 127.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
70919830 Antisense, RP_050713_02_B05, Mouse strain C57BL/6J (56 days, male) 1.7

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