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TTYH1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TTYH1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TTYH1
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Tweety family member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.42
Chromosome location (bp) 54415219 - 54436904
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000167614 (version 109)
Entrez gene 57348
HGNC HGNC:13476
UniProt Q9H313 (UniProt - Evidence at protein level)
neXtProt NX_Q9H313
GeneCards TTYH1
Antibodypedia TTYH1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Calcium-independent, swelling-dependent volume-regulated anion channel (VRAC-swell) which plays a pivotal role in the process of regulatory volume decrease (RVD) in the brain through the efflux of anions like chloride and organic osmolytes like glutamate.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chloride channel, Ion channel
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell adhesion, Ion transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Chloride
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the tweety family of proteins. Members of this family function as chloride anion channels. The encoded protein functions as a calcium(2+)-independent, volume-sensitive large conductance chloride(-) channel. Three transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jan 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TTYH1-201
ENSP00000301194
ENST00000301194
Q9H313
[Direct mapping] Protein tweety homolog 1
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005229 [intracellular calcium activated chloride channel activity]
GO:0005254 [chloride channel activity]
GO:0005381 [iron ion transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006821 [chloride transport]
GO:0006826 [iron ion transport]
GO:0007155 [cell adhesion]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0030868 [smooth endoplasmic reticulum membrane]
GO:0034220 [ion transmembrane transport]
GO:0034707 [chloride channel complex]
GO:0034755 [iron ion transmembrane transport]
GO:0072320 [volume-sensitive chloride channel activity]
GO:1902476 [chloride transmembrane transport]
Show all
451 aa
49.2 kDa
No 5
TTYH1-202
ENSP00000365713
ENST00000376530
Q9H313
[Direct mapping] Protein tweety homolog 1
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000278 [mitotic cell cycle]
GO:0005229 [intracellular calcium activated chloride channel activity]
GO:0005254 [chloride channel activity]
GO:0005381 [iron ion transmembrane transporter activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006821 [chloride transport]
GO:0006826 [iron ion transport]
GO:0007155 [cell adhesion]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0030868 [smooth endoplasmic reticulum membrane]
GO:0031527 [filopodium membrane]
GO:0031589 [cell-substrate adhesion]
GO:0032433 [filopodium tip]
GO:0034220 [ion transmembrane transport]
GO:0034707 [chloride channel complex]
GO:0034755 [iron ion transmembrane transport]
GO:0045202 [synapse]
GO:0046847 [filopodium assembly]
GO:0072320 [volume-sensitive chloride channel activity]
GO:0098609 [cell-cell adhesion]
GO:1902476 [chloride transmembrane transport]
Show all
450 aa
49.1 kDa
No 5
TTYH1-203
ENSP00000365714
ENST00000376531
Q9H313
[Direct mapping] Protein tweety homolog 1
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005229 [intracellular calcium activated chloride channel activity]
GO:0005254 [chloride channel activity]
GO:0005381 [iron ion transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006821 [chloride transport]
GO:0006826 [iron ion transport]
GO:0007155 [cell adhesion]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0030868 [smooth endoplasmic reticulum membrane]
GO:0034220 [ion transmembrane transport]
GO:0034707 [chloride channel complex]
GO:0034755 [iron ion transmembrane transport]
GO:0072320 [volume-sensitive chloride channel activity]
GO:1902476 [chloride transmembrane transport]
Show all
460 aa
49.8 kDa
No 5
TTYH1-205
ENSP00000391282
ENST00000423529
C9J3K6
[Direct mapping] Protein tweety homolog
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0005254 [chloride channel activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006821 [chloride transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0034707 [chloride channel complex]
GO:1902476 [chloride transmembrane transport]
Show all
157 aa
16.7 kDa
No 2
TTYH1-207
ENSP00000393592
ENST00000445095
E7ET67
[Direct mapping] Protein tweety homolog
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0005254 [chloride channel activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006821 [chloride transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0034707 [chloride channel complex]
GO:1902476 [chloride transmembrane transport]
Show all
280 aa
30.4 kDa
No 3

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