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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:270.9 nTPM
GTEx:270.9 nTPM
FANTOM5:145.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA061571
Squamous epithelial cells Not detected

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 270.9
Samples: 156

Max nTPM: 641.2
Min nTPM: 83.6
Std nTPM: 105.2
Median nTPM: 258.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 641.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 580.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 561.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 558.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 541.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 510.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 495.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 469.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 465.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 449.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 439.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 435.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 434.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 431.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 425.9
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 415.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 411.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 409.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 407.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 399.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 393.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 389.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 384.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 381.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 375.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 373.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 372.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 366.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 354.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 350.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 348.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 344.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 332.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 330.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 329.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 329.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 329.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 322.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 321.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 319.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 317.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 316.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 314.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 313.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 313.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 311.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 310.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 308.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 305.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 302.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 299.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 298.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 298.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 296.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 293.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 291.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 291.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 289.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 288.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 286.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 285.5
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 282.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 276.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 275.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 274.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 272.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 270.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 268.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 268.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 264.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 264.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 263.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 262.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 261.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 261.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 259.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 259.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 258.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 258.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 258.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 257.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 252.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 250.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 249.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 248.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 248.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 246.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 246.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 245.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 245.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 243.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 241.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 236.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 236.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 235.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 235.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 232.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 232.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 229.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 225.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 224.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 224.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 218.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 213.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 213.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 212.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 204.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 204.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 197.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 197.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 194.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 191.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 189.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 188.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 188.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 187.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 186.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 183.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 182.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 182.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 181.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 181.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 181.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 180.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 180.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 179.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 176.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 176.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 175.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 175.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 171.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 170.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 169.8
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 164.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 160.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 160.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 158.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 154.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 154.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 152.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 152.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 148.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 147.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 147.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 145.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 144.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 141.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 139.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 136.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 132.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 127.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 126.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 119.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 113.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 101.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 83.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

145.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 145.8
FF:10204-103F6 68 years, female 145.8

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