MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:333.5 nTPM
HPA Brain:575.8 nTPM
GTEx:333.5 nTPM
FANTOM5:282.0 Scaled Tags Per Million
Pig:202.9 nTPM
Mouse:23.7 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 575.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 397.2
1830 Male, age 51, unknown 517.8
1833 Male, age 53, unknown 513.7
2411 Female, age 72, unknown 475.1
1870 Female, age 42, unknown 454.1
2019 Male, age 18, unknown 435.5
2828 Female, age 72, unknown 402.6
2666 Male, age 74, left hemisphere 330.5
2586 Male, age 75, left hemisphere 313.7
2219 Male, age 76, both hemispheres 278.7
1827 Male, age 72, unknown 250.4
Dorsal raphe nucleus
nTPM: 277.1
2750 Male, age 76, both hemispheres 552.0
2016 Female, age 72, unknown 283.0
1828 Male, age 53, unknown 253.6
2047 Male, age 72, unknown 157.9
2298 Female, age 72, unknown 139.1
Inferior colliculus
nTPM: 251.5
2849 Male, age 72, unknown 308.4
1848 Female, age 42, unknown 259.4
1890 Male, age 53, unknown 255.4
2097 Female, age 72, unknown 183.0
Median raphe nucleus
nTPM: 243.8
2220 Male, age 76, midline 243.8
Periaquaductal grey, anterior
nTPM: 171.6
1947 Male, age 18, unknown 187.6
1795 Male, age 51, unknown 167.0
2502 Female, age 75, unknown 160.1
Periaquaductal grey, dorsal
nTPM: 158.6
2464 Female, age 72, unknown 259.5
1831 Male, age 72, unknown 181.0
2850 Male, age 76, both hemispheres 102.4
1840 Male, age 53, unknown 91.5
Periaquaductal grey, lateral
nTPM: 170.7
2272 Male, age 74, both hemispheres 235.0
2053 Male, age 18, unknown 188.5
2140 Male, age 76, both hemispheres 88.5
Pretectal area
nTPM: 228.9
1815 Male, age 53, unknown 346.1
2316 Male, age 76, right hemisphere 338.2
1817 Female, age 42, unknown 293.6
2007 Male, age 72, unknown 272.0
2407 Male, age 75, both hemispheres 268.6
2825 Male, age 18, unknown 255.5
2273 Male, age 74, both hemispheres 182.7
2224 Female, age 72, unknown 164.7
1944 Female, age 72, unknown 140.2
1816 Male, age 51, unknown 130.9
2667 Female, age 75, unknown 125.4
Red nucleus
nTPM: 575.8
2823 Male, age 76, right hemisphere 765.2
1904 Male, age 53, unknown 645.0
2769 Male, age 72, unknown 644.3
1821 Female, age 72, unknown 639.9
2227 Male, age 72, unknown 622.5
1865 Male, age 51, unknown 612.9
2503 Female, age 72, unknown 561.5
1954 Female, age 42, unknown 548.9
2785 Male, age 18, unknown 537.5
2588 Male, age 74, left hemisphere 489.9
2725 Female, age 75, unknown 482.2
2584 Male, age 75, left hemisphere 360.3
Substantia nigra
nTPM: 256.5
2583 Male, age 75, right hemisphere 365.1
2590 Female, age 75, unknown 346.1
1889 Female, age 72, unknown 310.9
1851 Male, age 51, unknown 292.3
2699 Male, age 18, unknown 269.1
2665 Male, age 74, both hemispheres 212.1
1941 Male, age 53, unknown 209.1
1916 Female, age 42, unknown 207.7
2409 Female, age 72, unknown 205.3
2241 Male, age 72, unknown 147.3
Superior colliculus
nTPM: 320.6
1995 Male, age 72, unknown 483.8
2668 Female, age 75, unknown 457.8
1913 Female, age 42, unknown 425.8
1895 Male, age 76, right hemisphere 376.4
2587 Male, age 74, left hemisphere 355.1
1839 Male, age 51, unknown 336.1
1796 Male, age 53, unknown 246.8
2664 Male, age 75, both hemispheres 187.5
2087 Female, age 72, unknown 172.8
2261 Male, age 18, unknown 164.4
Ventral tegmental area
nTPM: 307.9
2223 Female, age 72, unknown 446.9
2410 Female, age 72, unknown 349.7
2218 Male, age 76, both hemispheres 279.4
1942 Male, age 51, unknown 261.4
2021 Male, age 53, unknown 259.5
1915 Female, age 42, unknown 250.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 333.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 333.5
Samples: 139

Max nTPM: 1349.8
Min nTPM: 61.1
Std nTPM: 225.7
Median nTPM: 263.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1349.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1329.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1237.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1103.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1084.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 698.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 683.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 643.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 640.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 632.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 601.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 282.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 282.0
FF:10158-103A5 76 years, female 282.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 202.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 190.3
Samples: 4

Max nTPM: 314.5
Min nTPM: 99.6
Sample A Female 207.1
Sample B Female 140.0
Sample C Male 99.6
Sample D Male 314.5
Midbrain
nTPM: 202.9
Samples: 4

Max nTPM: 380.2
Min nTPM: 88.6
Sample A Female 380.2
Sample B Female 222.5
Sample C Male 88.6
Sample D Male 120.3
Periaqueductal gray
nTPM: 153.9
Samples: 3

Max nTPM: 182.8
Min nTPM: 111.0
Sample B Female 182.8
Sample C Male 111.0
Sample D Male 167.9
Superior colliculi
nTPM: 149.1
Samples: 4

Max nTPM: 205.0
Min nTPM: 85.1
Sample A Female 185.1
Sample B Female 85.1
Sample C Male 121.2
Sample D Male 205.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 29.7
Min nTPM: 18.4
Sample A Male 29.7
Sample B Male 18.4
Sample C Female 22.8
Sample D Female 23.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70546384 Antisense, RP_050623_04_C01, Mouse strain C57BL/6J (56 days, male) 0.6

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