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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:259.5 nTPM
HPA:259.5 nTPM
GTEx:176.9 nTPM
FANTOM5:412.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011101Antibody CAB018969
Glandular cells MediumHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.5
overview
Male, age 65
Small intestine sample 232
nTPM: 262.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 272.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 251.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 251.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 176.9
Samples: 187

Max nTPM: 824.4
Min nTPM: 4.2
Std nTPM: 159.2
Median nTPM: 137.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 824.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 642.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 548.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 536.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 506.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 496.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 478.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 476.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 474.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 470.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 464.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 459.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 447.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 436.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 420.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 412.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 408.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 407.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 399.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 397.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 397.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 397.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 391.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 389.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 388.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 387.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 380.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 378.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 373.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 369.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 367.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 362.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 361.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 359.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 348.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 343.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 331.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 326.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 325.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 315.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 312.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 307.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 301.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 299.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 275.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 273.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 271.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 270.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 270.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 266.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 265.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 265.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 257.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 256.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 255.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 251.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 250.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 249.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 247.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 246.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 242.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 238.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 235.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 230.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 228.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 217.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 216.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 211.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 210.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 205.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 204.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 202.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 199.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 196.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 189.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 186.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 183.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 181.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 180.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 179.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 177.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 175.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 175.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 173.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 170.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 166.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 166.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 165.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 163.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 149.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 145.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 144.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 144.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 137.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 137.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 136.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 135.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 130.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 130.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 125.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 112.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 108.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 107.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 107.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 104.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 103.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 92.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 90.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 90.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 88.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 83.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 83.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 83.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 78.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 71.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 68.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 66.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 65.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 63.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 62.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 61.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 60.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 56.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 55.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 54.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 52.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 52.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 52.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 52.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 50.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 49.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 48.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 45.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 44.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 44.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 41.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 40.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 40.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 40.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 39.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 38.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 37.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 37.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 34.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 33.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 32.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 30.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 28.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 28.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 27.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 26.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 25.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 24.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 24.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 24.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 20.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 19.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 18.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 18.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 16.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 12.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 12.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 12.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 11.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 11.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 11.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 10.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 10.1
GTEX-1192X-2526-SM-59868 50-59 years, male 10.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 9.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 9.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 7.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 7.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 7.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 6.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 6.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 6.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 6.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 6.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 6.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 6.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 6.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 6.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 5.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 5.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 5.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

412.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 412.7
FF:10024-101D6 15,40,85 years, mixed 412.7

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