MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA Brain:44.7 nTPM
GTEx:28.0 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:23.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.2
2019 Male, age 18, unknown 46.0
2666 Male, age 74, left hemisphere 44.9
2828 Female, age 72, unknown 43.9
2586 Male, age 75, left hemisphere 43.5
1827 Male, age 72, unknown 40.5
2411 Female, age 72, unknown 37.9
1870 Female, age 42, unknown 34.6
1833 Male, age 53, unknown 34.2
2219 Male, age 76, both hemispheres 33.5
1830 Male, age 51, unknown 33.1
Dorsal raphe nucleus
nTPM: 37.3
1828 Male, age 53, unknown 41.5
2047 Male, age 72, unknown 40.0
2298 Female, age 72, unknown 39.0
2016 Female, age 72, unknown 35.6
2750 Male, age 76, both hemispheres 30.3
Inferior colliculus
nTPM: 32.6
2097 Female, age 72, unknown 35.1
1848 Female, age 42, unknown 33.2
1890 Male, age 53, unknown 31.6
2849 Male, age 72, unknown 30.5
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 41.5
1795 Male, age 51, unknown 49.3
1947 Male, age 18, unknown 39.2
2502 Female, age 75, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 32.6
1831 Male, age 72, unknown 38.1
2850 Male, age 76, both hemispheres 34.5
2464 Female, age 72, unknown 29.4
1840 Male, age 53, unknown 28.5
Periaquaductal grey, lateral
nTPM: 37.7
2272 Male, age 74, both hemispheres 44.7
2140 Male, age 76, both hemispheres 36.9
2053 Male, age 18, unknown 31.3
Pretectal area
nTPM: 44.7
2007 Male, age 72, unknown 55.4
1816 Male, age 51, unknown 51.6
1817 Female, age 42, unknown 48.5
1944 Female, age 72, unknown 47.7
2273 Male, age 74, both hemispheres 46.8
1815 Male, age 53, unknown 46.0
2667 Female, age 75, unknown 45.3
2407 Male, age 75, both hemispheres 42.9
2316 Male, age 76, right hemisphere 37.4
2224 Female, age 72, unknown 37.1
2825 Male, age 18, unknown 32.5
Red nucleus
nTPM: 36.2
2785 Male, age 18, unknown 45.7
2725 Female, age 75, unknown 38.8
2769 Male, age 72, unknown 37.7
2584 Male, age 75, left hemisphere 36.9
1821 Female, age 72, unknown 36.7
2503 Female, age 72, unknown 36.3
1904 Male, age 53, unknown 35.9
2227 Male, age 72, unknown 35.5
1954 Female, age 42, unknown 33.8
1865 Male, age 51, unknown 32.8
2823 Male, age 76, right hemisphere 32.5
2588 Male, age 74, left hemisphere 32.1
Substantia nigra
nTPM: 41.2
1916 Female, age 42, unknown 54.4
1941 Male, age 53, unknown 48.2
1851 Male, age 51, unknown 47.7
1889 Female, age 72, unknown 46.0
2665 Male, age 74, both hemispheres 43.0
2699 Male, age 18, unknown 41.6
2583 Male, age 75, right hemisphere 39.3
2409 Female, age 72, unknown 32.7
2590 Female, age 75, unknown 31.8
2241 Male, age 72, unknown 27.1
Superior colliculus
nTPM: 40.3
2668 Female, age 75, unknown 52.3
2664 Male, age 75, both hemispheres 44.5
2087 Female, age 72, unknown 44.3
2261 Male, age 18, unknown 43.8
1796 Male, age 53, unknown 42.9
1913 Female, age 42, unknown 39.9
1995 Male, age 72, unknown 36.9
2587 Male, age 74, left hemisphere 34.3
1895 Male, age 76, right hemisphere 32.8
1839 Male, age 51, unknown 31.1
Ventral tegmental area
nTPM: 39.1
2410 Female, age 72, unknown 48.2
1915 Female, age 42, unknown 44.3
1942 Male, age 51, unknown 38.6
2218 Male, age 76, both hemispheres 34.6
2223 Female, age 72, unknown 34.5
2021 Male, age 53, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.0
Samples: 139

Max nTPM: 63.4
Min nTPM: 13.7
Std nTPM: 8.6
Median nTPM: 25.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 57.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 52.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 51.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 44.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 44.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 42.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 42.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 41.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 41.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 30.4
Min nTPM: 21.1
Sample A Female 30.4
Sample B Female 23.6
Sample C Male 29.2
Sample D Male 21.1
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.1
Sample A Female 22.4
Sample B Female 24.0
Sample C Male 23.6
Sample D Male 20.1
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 23.8
Min nTPM: 16.9
Sample B Female 22.2
Sample C Male 23.8
Sample D Male 16.9
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 17.6
Sample A Female 24.9
Sample B Female 17.6
Sample C Male 23.2
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 25.4
Min nTPM: 21.6
Sample A Male 21.9
Sample B Male 21.6
Sample C Female 23.6
Sample D Female 25.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70724661 Antisense, RP_050705_02_D05, Mouse strain C57BL/6J (56 days, male) 0.2

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