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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:457.6 nTPM
HPA Brain:171.7 nTPM
GTEx:457.6 nTPM
FANTOM5:381.0 Scaled Tags Per Million
Pig:448.7 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 149.9
1981 Female, age 72, midline 196.4
2816 Male, age 47, midline 163.9
2194 Female, age 79, both hemispheres 140.4
2048 Male, age 55, midline 137.1
2565 Male, age 75, midline 111.9
Cervical spinal cord, dorsal horn
nTPM: 171.7
2296 Male, age 66, both hemispheres 367.7
2173 Female, age 72, unknown 263.9
2069 Male, age 47, both hemispheres 147.3
1877 Male, age 55, unknown 124.2
2721 Male, age 90, both hemispheres 77.0
2297 Male, age 75, both hemispheres 50.0
Cervical spinal cord, ventral horn
nTPM: 161.1
2098 Female, age 72, unknown 202.7
2820 Female, age 79, both hemispheres 183.3
2068 Male, age 55, unknown 172.4
2480 Male, age 75, both hemispheres 160.6
2809 Male, age 90, both hemispheres 135.3
2295 Male, age 66, both hemispheres 112.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

457.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 457.6
Samples: 159

Max nTPM: 1012.8
Min nTPM: 70.4
Std nTPM: 194.1
Median nTPM: 428.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1012.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 948.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 925.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 893.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 888.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 860.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 834.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 808.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 798.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 757.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 757.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 740.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 740.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 726.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 718.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 712.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 710.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 704.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 701.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 695.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 690.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 674.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 671.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 659.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 654.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 653.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 651.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 651.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 643.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 636.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 635.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 630.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 622.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 618.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 616.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 612.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 612.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 610.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 606.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 605.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 605.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 604.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 603.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 603.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 593.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 589.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 580.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 577.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 571.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 567.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 566.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 551.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 531.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 527.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 525.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 524.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 524.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 522.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 522.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 505.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 498.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 493.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 485.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 473.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 470.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 470.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 470.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 463.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 460.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 457.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 456.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 456.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 452.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 451.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 448.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 445.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 444.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 439.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 437.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 428.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 424.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 424.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 424.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 415.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 410.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 407.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 403.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 401.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 398.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 394.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 394.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 391.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 389.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 386.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 384.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 382.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 382.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 379.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 378.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 377.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 376.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 375.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 372.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 371.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 366.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 362.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 361.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 360.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 359.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 357.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 355.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 355.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 346.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 346.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 346.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 337.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 336.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 332.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 327.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 326.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 308.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 306.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 306.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 303.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 294.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 294.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 289.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 280.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 277.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 275.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 272.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 269.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 267.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 259.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 252.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 242.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 238.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 235.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 232.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 231.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 205.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 205.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 201.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 199.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 198.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 197.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 192.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 191.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 189.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 184.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 180.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 172.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 167.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 160.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 156.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 152.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 94.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 79.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 70.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

381.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 381.0
FF:10181-103D1 60 years, female 514.7
FF:10159-103A6 76 years, female 247.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

448.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 314.1
Samples: 4

Max nTPM: 343.2
Min nTPM: 291.9
Sample A Female 292.3
Sample B Female 291.9
Sample C Male 343.2
Sample D Male 328.8
Ventral spinal cord
nTPM: 448.7
Samples: 4

Max nTPM: 593.1
Min nTPM: 361.9
Sample A Female 428.4
Sample B Female 361.9
Sample C Male 411.4
Sample D Male 593.1

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