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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1218.9 nTPM
GTEx:1218.9 nTPM
FANTOM5:0.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA017917Antibody HPA062908Antibody CAB002153
Squamous epithelial cells HighMediumMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1218.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1218.9
Samples: 156

Max nTPM: 23510.3
Min nTPM: 0.0
Std nTPM: 2648.9
Median nTPM: 156.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 23510.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 10260.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 8631.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 8318.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 8272.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 7617.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 6926.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 6196.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 6038.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 5895.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 5473.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 5382.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 4823.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 3604.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 3405.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 3179.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3124.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 3034.8
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 3015.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2849.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 2841.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2483.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2474.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2248.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2206.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2182.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 2099.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2038.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1970.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1675.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1668.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1581.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1550.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1534.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1465.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1401.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1387.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1245.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1213.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 1212.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1205.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1079.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1055.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1038.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1008.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 938.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 936.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 842.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 826.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 804.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 801.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 751.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 728.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 721.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 697.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 685.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 659.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 650.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 643.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 530.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 507.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 481.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 479.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 430.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 414.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 392.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 384.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 375.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 370.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 314.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 312.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 306.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 298.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 256.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 211.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 191.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 181.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 174.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 138.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 131.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 125.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 113.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 98.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 86.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 84.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 83.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 60.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 50.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 49.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 39.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 36.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 35.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 21.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 18.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 17.4
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 16.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 16.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 13.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 12.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 12.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 11.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 10.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 8.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 8.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 7.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 6.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 5.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 5.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 5.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 5.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 4.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 4.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 3.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 3.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 3.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 3.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 3.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 3.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 3.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 3.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 2.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 0.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 0.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 0.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 0.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 0.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 0.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 0.0
FF:10204-103F6 68 years, female 0.0

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