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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:81.7 nTPM
HPA Brain:120.7 nTPM
GTEx:81.7 nTPM
FANTOM5:105.6 Scaled Tags Per Million
Pig:81.6 nTPM
Mouse:120.3 nTPM
Allen mouse:16.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.7
Sample id Sample description nTPM
Amygdala
nTPM: 91.3
1987 Female, age 91, left hemisphere 101.4
2517 Female, age 94, left hemisphere 97.6
2814 Male, age 76, right hemisphere 92.2
2514 Male, age 75, right hemisphere 82.9
2695 Female, age 67, right hemisphere 82.5
Basal amygdala
nTPM: 120.7
2110 Male, age 80, left hemisphere 143.3
2685 Female, age 94, left hemisphere 134.1
2243 Female, age 91, right hemisphere 133.6
2609 Male, age 75, right hemisphere 107.1
2827 Female, age 67, right hemisphere 104.5
1955 Male, age 76, both hemispheres 101.6
Central amygdala
nTPM: 112.2
2826 Female, age 94, left hemisphere 150.8
2239 Male, age 80, left hemisphere 127.0
2515 Male, age 75, right hemisphere 103.1
2701 Female, age 91, right hemisphere 96.6
1905 Male, age 76, both hemispheres 83.2
Corticomedial amygdala
nTPM: 117.6
2829 Male, age 80, left hemisphere 150.5
2242 Female, age 91, right hemisphere 133.3
2535 Female, age 67, right hemisphere 120.6
2429 Female, age 94, left hemisphere 115.2
2240 Male, age 76, both hemispheres 95.9
2428 Male, age 75, right hemisphere 90.4
Lateral amygdala
nTPM: 110.4
2534 Female, age 94, left hemisphere 153.2
2256 Male, age 80, left hemisphere 114.9
2255 Female, age 91, right hemisphere 106.7
1883 Male, age 76, both hemispheres 103.9
2516 Male, age 75, right hemisphere 92.4
2830 Female, age 67, right hemisphere 91.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 81.7
Samples: 152

Max nTPM: 205.3
Min nTPM: 30.4
Std nTPM: 33.2
Median nTPM: 75.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 205.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 199.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 163.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 155.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 149.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 145.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 143.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 143.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 141.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 140.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 139.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 137.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 137.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 136.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 134.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 129.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 128.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 128.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 126.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 120.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 115.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 113.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 112.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 112.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 111.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 111.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 110.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 108.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 107.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 106.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 106.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 105.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 105.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 105.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 102.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 102.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 99.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 99.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 98.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 97.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 97.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 97.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 96.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 95.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 93.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 92.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 92.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 92.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 90.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 89.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 89.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 88.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 87.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 87.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 83.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 83.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 82.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 80.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 79.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 79.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 78.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 78.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 77.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 76.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 76.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 76.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 76.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 76.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 75.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 74.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 72.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 71.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 71.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 71.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 70.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 68.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 68.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 67.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 66.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 65.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 65.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 64.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 64.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 64.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 64.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 63.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 63.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 63.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 62.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 62.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 62.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 61.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 61.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 61.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 61.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 61.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 60.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 60.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 59.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 59.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 58.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 58.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 58.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 58.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 56.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 56.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 55.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 55.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 55.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 55.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 53.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 53.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 53.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 52.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 51.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 50.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 50.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 48.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 48.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 48.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 47.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 46.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 46.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 45.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 45.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 44.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 43.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 42.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 42.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 41.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 41.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 41.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 39.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 38.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 38.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 37.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 33.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 32.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 105.6
FF:10151-102I7 76 years, female 105.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.6
Pig sample Sample description nTPM
Amygdala
nTPM: 81.6
Samples: 4

Max nTPM: 115.5
Min nTPM: 64.6
Sample A Female 115.5
Sample B Female 64.6
Sample C Male 76.3
Sample D Male 69.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 120.3
Samples: 4

Max nTPM: 128.4
Min nTPM: 112.8
Sample A Male 128.4
Sample B Male 118.6
Sample C Female 121.4
Sample D Female 112.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.2
69528112 Antisense, RP_050421_03_B05, Mouse strain C57BL/6J (56 days, male) 16.2

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