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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:248.2 nTPM
GTEx:248.2 nTPM
FANTOM5:196.8 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:1109.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 248.2
Samples: 105

Max nTPM: 338.2
Min nTPM: 165.2
Std nTPM: 34.7
Median nTPM:
246_1 77 years, male 338.2
375_1 74 years, female 337.9
162_1 79 years, female 317.3
414_1 84 years, female 313.3
142_1 61 years, female 306.9
413_1 59 years, female 306.7
229_1 69 years, female 301.9
396_1 62 years, male 301.1
466_1 57 years, female 300.7
379_1 60 years, male 293.0
126_1 63 years, male 291.4
35_1 74 years, female 290.4
313_1 79 years, female 288.6
237_1 82 years, male 288.0
377_1 82 years, female 287.0
490_1 67 years, female 285.7
265_1 87 years, male 283.9
2_1 77 years, female 283.6
386_1 76 years, male 282.2
384_1 83 years, male 282.1
43_1 64 years, female 278.8
315_1 62 years, female 278.1
153_1 70 years, female 276.7
120_1 70 years, female 273.3
501_1 88 years, male 272.7
6_1 73 years, female 272.6
415_1 77 years, female 270.3
17_1 71 years, male 269.7
177_1 74 years, male 269.2
4_1 88 years, female 267.8
189_1 76 years, male 267.8
115_1 83 years, male 267.5
468_1 89 years, male 267.1
9_1 66 years, female 263.7
491_1 89 years, female 261.9
319_1 81 years, male 261.6
117_1 61 years, male 261.5
254_1 77 years, female 260.6
324_1 76 years, male 260.3
389_1 86 years, female 260.0
307_1 66 years, female 259.7
145_1 84 years, male 258.7
347_1 72 years, male 258.3
18_1 88 years, male 258.2
394_1 75 years, female 258.0
499_1 55 years, female 257.2
42_1 85 years, male 257.0
109_1 81 years, female 253.7
243_1 75 years, male 253.2
321_1 62 years, female 252.1
217_1 76 years, male 251.8
447_1 81 years, male 251.5
376_1 75 years, female 250.7
526_1 61 years, male 247.4
404_1 82 years, female 243.8
452_1 88 years, female 241.6
266_1 85 years, male 240.4
172_1 72 years, female 240.3
518_1 75 years, female 239.8
139_1 64 years, female 238.2
32_1 67 years, male 236.7
163_1 78 years, male 235.1
119_1 70 years, female 234.3
335_1 73 years, female 234.2
264_1 73 years, female 233.7
149_1 88 years, male 233.3
355_1 70 years, female 233.1
218_1 71 years, female 232.5
311_1 78 years, male 231.6
506_1 65 years, male 230.3
288_1 66 years, female 229.8
137_1 83 years, male 229.6
425_1 59 years, female 229.5
89_1 63 years, male 228.6
322_1 76 years, male 226.8
350_1 84 years, female 226.4
81_1 67 years, male 226.3
480_1 63 years, male 224.1
316_1 62 years, male 223.8
173_1 67 years, male 222.9
286_1 68 years, female 221.3
354_1 81 years, female 218.9
517_1 88 years, male 216.7
405_1 91 years, male 216.4
503_1 68 years, male 215.9
352_1 62 years, male 213.4
251_1 78 years, male 213.3
495_1 57 years, female 212.5
291_1 76 years, male 211.5
353_1 82 years, female 210.8
406_1 79 years, male 209.8
348_1 84 years, male 209.4
308_1 70 years, female 209.2
349_1 83 years, male 205.4
99_1 64 years, male 203.2
293_1 68 years, female 202.8
318_1 68 years, male 202.0
295_1 61 years, female 200.8
356_1 87 years, female 196.9
351_1 91 years, male 196.5
314_1 67 years, male 196.4
317_1 60 years, male 190.8
320_1 89 years, female 186.3
292_1 71 years, male 177.4
41_1 94 years, female 165.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 196.8
FF:10030-101E3 24-65 years, mixed 196.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.3
Pig sample Sample description nTPM
Retina
nTPM: 15.3
Samples: 4

Max nTPM: 18.2
Min nTPM: 13.6
Sample A Female 18.2
Sample B Female 15.4
Sample C Male 13.6
Sample D Male 13.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1109.3
Mouse sample Sample description nTPM
Retina
nTPM: 1109.3
Samples: 4

Max nTPM: 1249.9
Min nTPM: 1008.7
Sample A Male 1135.7
Sample B Male 1008.7
Sample C Female 1249.9
Sample D Female 1042.8

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