Expression of ATP5PD in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

ATP5PD is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 528.63

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

458.0

Number of samples

362

Samples

Sample	Description	pTPM
TCGA-DD-A3A7-01A	67 years, male, stage:Stage IIIB, dead, 419 days	1123.8
TCGA-BC-A10T-01A	76 years, male, white, stage:'--, dead, 837 days	1121.3
TCGA-G3-A25S-01A	64 years, male, white, stage:Stage I, dead, 416 days	1088.1
TCGA-DD-AADF-01A	64 years, female, asian, stage:Stage I, dead, 115 days	1051.5
TCGA-DD-AACJ-01A	75 years, male, asian, stage:Stage II, alive, 2102 days	1031.6
TCGA-DD-AAEE-01A	55 years, male, asian, stage:Stage I, alive, 810 days	891.9
TCGA-DD-AAD5-01A	54 years, male, asian, stage:Stage I, alive, 1345 days	874.0
TCGA-ED-A7PZ-01A	61 years, male, asian, stage:Stage II, alive, 6 days	870.2
TCGA-BC-A217-01A	75 years, female, white, stage:Stage II, dead, 1397 days	848.3
TCGA-CC-A8HU-01A	39 years, female, asian, stage:Stage IIIA, dead, 344 days	829.1
TCGA-DD-A3A1-01A	65 years, male, stage:Stage IIIA, dead, 233 days	822.3
TCGA-CC-A5UE-01A	48 years, male, asian, stage:Stage IIIB, dead, 272 days	816.5
TCGA-DD-AADC-01A	53 years, male, asian, stage:Stage I, dead, 425 days	809.1
TCGA-CC-A7IL-01A	61 years, male, asian, stage:Stage IIIA, dead, 278 days	797.5
TCGA-CC-A7IF-01A	59 years, male, asian, stage:Stage IIIA, dead, 649 days	786.3
TCGA-CC-A8HT-01A	74 years, male, asian, stage:Stage IIIA, dead, 140 days	769.0
TCGA-G3-AAV5-01A	67 years, male, white, stage:Stage II, alive, 354 days	768.3
TCGA-G3-A5SI-01A	44 years, male, asian, stage:Stage II, dead, 768 days	767.5
TCGA-MI-A75I-01A	61 years, male, black or african american, stage:'--, alive, 630 days	760.7
TCGA-DD-A73D-01A	68 years, female, white, stage:Stage II, alive, 693 days	759.7
TCGA-G3-A25T-01A	45 years, female, white, stage:Stage IIIA, alive, 1553 days	757.4
TCGA-G3-A25X-01A	73 years, male, asian, stage:Stage II, alive, 1779 days	746.2
TCGA-FV-A495-01A	51 years, female, white, stage:Stage II, alive, 1 days	737.0
TCGA-LG-A9QC-01A	48 years, male, white, stage:Stage I, alive, 425 days	730.5
TCGA-G3-A25Z-01A	58 years, male, asian, stage:Stage I, alive, 655 days	725.6
TCGA-DD-AAEA-01A	65 years, male, asian, stage:Stage I, alive, 575 days	702.9
TCGA-DD-A119-01A	40 years, male, asian, stage:Stage IV, dead, 223 days	696.2
TCGA-DD-AACX-01A	66 years, male, asian, stage:Stage II, alive, 170 days	693.8
TCGA-CC-5263-01A	35 years, male, asian, stage:Stage IIIA, dead, 129 days	693.0
TCGA-CC-A5UD-01A	45 years, male, asian, stage:Stage IIIA, dead, 304 days	691.5
TCGA-CC-A7IG-01A	47 years, male, asian, stage:Stage II, dead, 299 days	685.4
TCGA-FV-A2QR-01A	75 years, male, white, stage:Stage I, dead, 581 days	684.6
TCGA-BC-A10Q-01A	72 years, female, white, stage:'--, dead, 1135 days	683.0
TCGA-BC-A10Y-01A	76 years, male, white, stage:'--, dead, 711 days	669.4
TCGA-5C-A9VG-01A	58 years, male, white, stage:Stage II, alive, 328 days	660.4
TCGA-DD-A3A6-01A	72 years, female, white, stage:Stage II, dead, 3258 days	649.4
TCGA-ZP-A9CZ-01A	72 years, male, asian, stage:'--, alive, 706 days	638.7
TCGA-DD-A114-01A	42 years, male, black or african american, stage:Stage II, dead, 1149 days	630.7
TCGA-RC-A6M6-01A	75 years, male, white, stage:Stage II, alive, 9 days	629.7
TCGA-DD-AADM-01A	58 years, male, asian, stage:Stage II, dead, 12 days	629.7
TCGA-G3-AAV6-01A	53 years, female, white, stage:Stage IIIA, dead, 65 days	624.4
TCGA-DD-AAC8-01A	72 years, male, asian, stage:Stage I, dead, 16 days	622.1
TCGA-ED-A7PX-01A	48 years, female, asian, stage:Stage II, alive, 6 days	617.2
TCGA-2Y-A9H9-01A	70 years, male, white, stage:Stage I, alive, 697 days	615.8
TCGA-CC-A3MB-01A	36 years, male, asian, stage:Stage IIIA, dead, 315 days	612.8
TCGA-DD-AACL-01A	66 years, female, asian, stage:Stage I, dead, 107 days	611.7
TCGA-ZP-A9D2-01A	51 years, male, white, stage:'--, dead, 765 days	610.0
TCGA-G3-A5SJ-01A	59 years, male, white, stage:Stage I, alive, 698 days	609.3
TCGA-DD-AACI-01A	69 years, male, asian, stage:Stage II, alive, 1618 days	604.6
TCGA-2Y-A9GY-01A	64 years, female, white, stage:Stage II, dead, 757 days	603.6
TCGA-DD-A4NQ-01A	60 years, male, white, stage:Stage II, dead, 373 days	602.7
TCGA-DD-AACO-01A	40 years, male, asian, stage:Stage I, alive, 1876 days	602.0
TCGA-XR-A8TD-01A	49 years, female, white, stage:Stage IIIB, alive, 1030 days	601.4
TCGA-G3-AAV7-01A	38 years, male, asian, stage:Stage II, alive, 361 days	599.8
TCGA-BC-A112-01A	80 years, male, white, stage:'--, dead, 153 days	599.7
TCGA-DD-AACA-01A	65 years, male, asian, stage:Stage I, alive, 2301 days	599.3
TCGA-CC-A123-01A	24 years, female, asian, stage:Stage IIIA, alive, 219 days	597.8
TCGA-BC-A10W-01A	50 years, male, asian, stage:'--, dead, 91 days	595.2
TCGA-DD-A118-01A	77 years, female, white, stage:Stage II, alive, 3437 days	593.1
TCGA-DD-A39Y-01A	67 years, male, asian, stage:Stage I, dead, 171 days	588.7
TCGA-ED-A7XP-01A	53 years, female, asian, stage:Stage II, alive, 400 days	588.4
TCGA-WX-AA47-01A	33 years, female, white, stage:Stage IIIA, dead, 556 days	588.3
TCGA-DD-AADG-01A	70 years, male, asian, stage:Stage IIIA, alive, 1145 days	585.1
TCGA-DD-AAE0-01A	45 years, female, asian, stage:Stage IIIA, alive, 555 days	582.6
TCGA-G3-A3CJ-01A	52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	579.3
TCGA-BC-A10Z-01A	62 years, female, white, stage:Stage I, dead, 34 days	578.9
TCGA-G3-AAV1-01A	51 years, male, asian, stage:Stage IIIC, dead, 359 days	577.7
TCGA-ES-A2HS-01A	80 years, male, white, stage:Stage I, dead, 688 days	573.3
TCGA-2Y-A9GZ-01A	82 years, female, white, stage:Stage II, dead, 848 days	568.1
TCGA-G3-AAUZ-01A	48 years, male, stage:Stage I, alive, 480 days	566.3
TCGA-RC-A7S9-01A	47 years, female, asian, stage:Stage I, alive, 640 days	565.9
TCGA-CC-A3MC-01A	54 years, male, asian, stage:Stage IIIA, alive, 363 days	565.7
TCGA-BC-A69H-01A	64 years, male, white, stage:Stage II, alive, 444 days	565.7
TCGA-RG-A7D4-01A	69 years, male, black or african american, stage:Stage II, alive, 1098 days	564.2
TCGA-DD-AAVP-01A	48 years, male, asian, stage:Stage I, alive, 2752 days	563.9
TCGA-DD-A4NJ-01A	54 years, female, white, stage:Stage II, alive, 928 days	563.4
TCGA-BC-A3KG-01A	68 years, female, white, stage:Stage II, alive, 680 days	562.0
TCGA-CC-A7IJ-01A	56 years, male, asian, stage:Stage II, alive, 382 days	560.9
TCGA-DD-AADI-01A	43 years, female, asian, stage:Stage I, alive, 1085 days	560.1
TCGA-FV-A23B-01A	70 years, female, white, stage:Stage II, dead, 1852 days	557.1
TCGA-NI-A4U2-01A	71 years, male, white, stage:Stage IIIA, dead, 1791 days	556.9
TCGA-2Y-A9H3-01A	45 years, male, white, stage:Stage II, alive, 1516 days	549.7
TCGA-DD-A1EL-01A	23 years, male, black or african american, stage:Stage II, dead, 415 days	546.0
TCGA-DD-A3A9-01A	64 years, female, white, stage:Stage IVB, dead, 931 days	545.8
TCGA-DD-AADW-01A	48 years, male, asian, stage:Stage I, alive, 587 days	545.1
TCGA-CC-A1HT-01A	50 years, male, asian, stage:Stage IIIA, dead, 101 days	541.1
TCGA-DD-AAED-01A	51 years, male, asian, stage:Stage I, alive, 763 days	541.0
TCGA-CC-5260-01A	61 years, female, asian, stage:Stage IIIC, dead, 87 days	540.2
TCGA-DD-AAE3-01A	50 years, male, asian, stage:Stage I, alive, 566 days	540.0
TCGA-DD-AACE-01A	62 years, male, asian, stage:Stage I, alive, 2184 days	538.4
TCGA-DD-A73B-01A	72 years, female, white, stage:Stage I, dead, 283 days	537.5
TCGA-BW-A5NO-01A	50 years, male, black or african american, stage:Stage IIIA, alive, 20 days	536.4
TCGA-CC-5262-01A	67 years, male, asian, stage:Stage IIIC, dead, 103 days	533.5
TCGA-DD-AADL-01A	58 years, male, asian, stage:Stage I, alive, 636 days	531.3
TCGA-G3-A25Y-01A	52 years, female, asian, stage:Stage I, dead, 452 days	528.9
TCGA-EP-A2KC-01A	62 years, male, black or african american, stage:Stage I, dead, 19 days	528.8
TCGA-ZS-A9CE-01A	79 years, female, white, stage:Stage II, alive, 1241 days	528.5
TCGA-DD-A3A5-01A	66 years, female, white, stage:Stage III, dead, 3125 days	527.9
TCGA-LG-A6GG-01A	79 years, female, white, stage:Stage II, alive, 387 days	527.7
TCGA-DD-AADS-01A	63 years, male, asian, stage:Stage I, alive, 474 days	527.2
TCGA-RC-A7SK-01A	59 years, male, asian, stage:Stage I, alive, 472 days	526.6
TCGA-DD-AADU-01A	60 years, male, asian, stage:Stage II, alive, 554 days	526.0
TCGA-DD-AAD8-01A	73 years, female, asian, stage:Stage I, alive, 1219 days	525.9
TCGA-2Y-A9GU-01A	55 years, female, white, stage:Stage I, alive, 1939 days	524.9
TCGA-DD-AACS-01A	39 years, male, asian, stage:Stage I, alive, 1804 days	523.8
TCGA-DD-AAE9-01A	69 years, male, asian, stage:Stage I, alive, 722 days	521.9
TCGA-G3-AAV4-01A	83 years, female, white, stage:Stage I, dead, 27 days	521.7
TCGA-BC-A3KF-01A	66 years, female, white, stage:Stage I, alive, 8 days	520.2
TCGA-KR-A7K0-01A	65 years, male, white, stage:Stage I, dead, 65 days	519.0
TCGA-CC-5264-01A	71 years, male, asian, stage:Stage IIIA, dead, 102 days	517.7
TCGA-DD-AADO-01A	55 years, male, asian, stage:Stage I, alive, 453 days	516.6
TCGA-DD-AADJ-01A	70 years, female, asian, stage:Stage I, alive, 1066 days	514.6
TCGA-DD-AAEG-01A	59 years, female, asian, stage:Stage I, alive, 719 days	514.5
TCGA-CC-A8HV-01A	51 years, female, asian, stage:Stage II, dead, 279 days	512.2
TCGA-2Y-A9H0-01A	49 years, male, white, stage:Stage IIIA, alive, 3675 days	511.3
TCGA-DD-A115-01A	53 years, male, white, stage:Stage IIIA, dead, 2542 days	510.0
TCGA-DD-AADR-01A	58 years, male, asian, stage:Stage I, alive, 2028 days	508.3
TCGA-DD-A73G-01A	73 years, female, white, stage:Stage I, alive, 3478 days	506.9
TCGA-QA-A7B7-01A	48 years, male, black or african american, stage:Stage II, alive, 94 days	505.6
TCGA-DD-A4NA-01A	67 years, female, white, stage:Stage IIIC, alive, 1008 days	505.3
TCGA-DD-A1EB-01A	72 years, female, stage:Stage I, alive, 2017 days	505.0
TCGA-CC-A3MA-01A	61 years, male, asian, stage:Stage IIIA, dead, 303 days	503.2
TCGA-ED-A7PY-01A	20 years, female, asian, stage:Stage II, alive, 390 days	501.9
TCGA-DD-AACG-01A	52 years, male, asian, stage:Stage II, dead, 469 days	499.3
TCGA-ED-A82E-01A	60 years, female, asian, stage:Stage IIIA, alive, 408 days	497.5
TCGA-DD-AA3A-01A	81 years, female, white, stage:Stage I, dead, 410 days	495.8
TCGA-DD-A4NH-01A	65 years, female, white, stage:Stage IIIB, alive, 917 days	495.5
TCGA-DD-AAE4-01A	49 years, female, asian, stage:Stage I, alive, 608 days	495.1
TCGA-DD-A11C-01A	69 years, male, white, stage:Stage I, alive, 662 days	493.6
TCGA-WQ-A9G7-01A	71 years, female, white, stage:'--, alive, 30 days	493.1
TCGA-MI-A75G-01A	63 years, male, white, stage:Stage II, alive, 698 days	492.2
TCGA-O8-A75V-01A	54 years, male, stage:Stage I, alive, 538 days	490.5
TCGA-RC-A7SB-01A	53 years, male, asian, stage:Stage II, alive, 588 days	490.0
TCGA-BC-A10U-01A	69 years, male, white, stage:'--, dead, 837 days	489.7
TCGA-DD-AACH-01A	69 years, male, asian, stage:Stage II, dead, 195 days	488.8
TCGA-UB-A7MD-01A	67 years, male, black or african american, stage:Stage I, dead, 52 days	486.0
TCGA-DD-AAEH-01A	73 years, male, asian, stage:Stage I, alive, 784 days	480.3
TCGA-WQ-AB4B-01A	62 years, male, white, stage:Stage II, alive, 395 days	480.0
TCGA-DD-AACU-01A	59 years, male, asian, stage:Stage I, alive, 1567 days	479.6
TCGA-4R-AA8I-01A	66 years, male, white, stage:Stage II, dead, 262 days	478.0
TCGA-2Y-A9HB-01A	66 years, male, stage:Stage I, alive, 260 days	477.2
TCGA-DD-AACD-01A	48 years, male, asian, stage:Stage I, dead, 381 days	477.0
TCGA-DD-A39Z-01A	43 years, female, stage:Stage II, dead, 601 days	477.0
TCGA-KR-A7K7-01A	61 years, female, white, stage:Stage II, alive, 951 days	475.9
TCGA-DD-AAVU-01A	46 years, male, asian, stage:Stage II, alive, 2202 days	475.1
TCGA-DD-A4NN-01A	56 years, female, white, stage:Stage I, dead, 899 days	474.2
TCGA-DD-AAVV-01A	56 years, male, asian, stage:Stage II, alive, 2455 days	474.0
TCGA-G3-A5SL-01A	70 years, male, white, stage:Stage II, alive, 621 days	473.7
TCGA-DD-A1EJ-01A	71 years, female, white, stage:Stage IIIC, dead, 1005 days	473.0
TCGA-BD-A2L6-01A	69 years, male, white, stage:'--, alive, 1363 days	472.5
TCGA-DD-AAE2-01A	51 years, male, asian, stage:Stage I, alive, 638 days	471.7
TCGA-G3-A3CK-01A	61 years, male, asian, stage:Stage I, alive, 585 days	470.8
TCGA-5C-AAPD-01A	61 years, male, asian, stage:Stage II, alive, 20 days	469.4
TCGA-DD-A11B-01A	73 years, male, white, stage:Stage I, dead, 14 days	468.9
TCGA-DD-A1EA-01A	68 years, male, asian, stage:Stage II, alive, 2415 days	468.7
TCGA-DD-AACK-01A	70 years, male, asian, stage:Stage I, alive, 9 days	467.4
TCGA-2Y-A9H2-01A	64 years, female, white, stage:Stage I, alive, 1731 days	463.1
TCGA-FV-A496-01A	84 years, female, white, stage:Stage I, alive, 10 days	462.4
TCGA-DD-AAVR-01A	44 years, male, asian, stage:Stage I, alive, 2513 days	460.9
TCGA-T1-A6J8-01A	68 years, male, white, stage:'--, alive, 23 days	460.6
TCGA-FV-A3R2-01A	75 years, male, white, stage:Stage I, dead, 194 days	460.5
TCGA-RC-A7SH-01A	42 years, male, asian, stage:Stage II, alive, 468 days	459.5
TCGA-GJ-A6C0-01A	75 years, female, white, stage:Stage II, dead, 31 days	458.1
TCGA-DD-AADV-01A	50 years, male, asian, stage:Stage I, alive, 574 days	457.2
TCGA-ZP-A9D4-01A	64 years, female, white, stage:'--, alive, 395 days	455.1
TCGA-MI-A75E-01A	61 years, male, white, stage:Stage IIIC, alive, 507 days	454.8
TCGA-DD-A3A3-01A	45 years, male, asian, stage:Stage I, dead, 535 days	454.8
TCGA-3K-AAZ8-01A	65 years, male, black or african american, stage:Stage IIIB, alive, 396 days	454.3
TCGA-DD-AACB-01A	74 years, female, asian, stage:Stage I, alive, 2324 days	453.3
TCGA-CC-A5UC-01A	63 years, male, asian, stage:Stage IIIA, dead, 347 days	452.2
TCGA-CC-A8HS-01A	18 years, male, asian, stage:Stage IIIC, dead, 300 days	451.6
TCGA-DD-AACF-01A	68 years, male, asian, stage:Stage I, dead, 365 days	451.5
TCGA-UB-A7MF-01A	56 years, male, white, stage:Stage IIIA, dead, 214 days	451.0
TCGA-DD-AAEB-01A	60 years, male, asian, stage:Stage I, alive, 478 days	445.5
TCGA-G3-A7M5-01A	76 years, male, asian, stage:Stage I, alive, 447 days	444.3
TCGA-DD-A39X-01A	78 years, female, white, stage:Stage I, dead, 1694 days	441.7
TCGA-2Y-A9H4-01A	68 years, male, black or african american, stage:Stage I, alive, 1452 days	436.2
TCGA-MI-A75H-01A	77 years, male, white, stage:'--, alive, 747 days	436.2
TCGA-DD-AAVQ-01A	38 years, male, asian, stage:Stage I, alive, 2728 days	435.8
TCGA-2Y-A9H1-01A	58 years, male, white, stage:Stage I, dead, 1229 days	435.4
TCGA-CC-A9FS-01A	55 years, male, asian, stage:Stage II, alive, 211 days	433.3
TCGA-DD-A116-01A	68 years, male, asian, stage:Stage IIIA, dead, 1622 days	433.1
TCGA-DD-AADQ-01A	59 years, male, asian, stage:Stage II, alive, 436 days	430.6
TCGA-2Y-A9GS-01A	58 years, male, white, stage:'--, dead, 724 days	429.2
TCGA-DD-A1EI-01A	46 years, male, asian, stage:Stage I, alive, 183 days	429.0
TCGA-DD-AAE6-01A	59 years, female, asian, stage:Stage I, alive, 141 days	428.8
TCGA-KR-A7K8-01A	57 years, male, stage:Stage I, alive, 906 days	426.6
TCGA-DD-A4NO-01A	65 years, male, white, stage:Stage I, alive, 2245 days	426.2
TCGA-DD-A73E-01A	66 years, male, white, stage:Stage I, alive, 44 days	426.1
TCGA-ZS-A9CF-01A	64 years, male, white, stage:Stage II, alive, 2412 days	425.6
TCGA-K7-AAU7-01A	61 years, male, white, stage:Stage II, alive, 359 days	424.6
TCGA-G3-A7M9-01A	70 years, male, white, stage:Stage IIIB, dead, 56 days	424.2
TCGA-DD-AAW1-01A	55 years, male, asian, stage:Stage IIIA, alive, 1989 days	423.5
TCGA-DD-AADD-01A	51 years, male, asian, stage:Stage I, alive, 1231 days	423.2
TCGA-DD-AAVS-01A	56 years, male, asian, stage:Stage I, alive, 1823 days	422.9
TCGA-CC-A3M9-01A	45 years, male, asian, stage:Stage IIIA, dead, 300 days	422.4
TCGA-PD-A5DF-01A	58 years, female, white, stage:Stage IIIB, dead, 639 days	422.0
TCGA-G3-A3CH-01A	53 years, male, asian, stage:Stage IIIA, alive, 780 days	420.8
TCGA-DD-A4NP-01A	32 years, male, white, stage:Stage I, alive, 3308 days	420.7
TCGA-DD-A11D-01A	57 years, female, white, stage:Stage I, dead, 1560 days	417.4
TCGA-ED-A459-01A	47 years, male, asian, stage:Stage II, alive, 910 days	413.2
TCGA-UB-AA0U-01A	60 years, male, white, stage:Stage II, alive, 327 days	412.7
TCGA-EP-A3RK-01A	73 years, male, white, stage:Stage IIIA, alive, 363 days	412.2
TCGA-ED-A7XO-01A	29 years, male, asian, stage:Stage IIIA, alive, 427 days	412.0
TCGA-XR-A8TC-01A	43 years, female, white, stage:Stage I, alive, 1339 days	411.4
TCGA-BC-A8YO-01A	66 years, female, white, stage:Stage IIIC, alive, 562 days	409.0
TCGA-DD-AAW3-01A	69 years, male, asian, stage:Stage I, alive, 1633 days	408.8
TCGA-CC-A9FW-01A	68 years, male, asian, stage:Stage IIIA, alive, 248 days	408.4
TCGA-UB-A7MC-01A	59 years, male, white, stage:Stage IIIA, alive, 500 days	408.1
TCGA-DD-AACV-01A	53 years, male, asian, stage:Stage I, alive, 1531 days	406.5
TCGA-BD-A3EP-01A	75 years, female, black or african american, stage:Stage I, alive, 409 days	406.2
TCGA-XR-A8TF-01A	74 years, male, white, stage:Stage I, dead, 693 days	406.0
TCGA-5R-AA1C-01A	57 years, male, white, stage:Stage II, alive, 520 days	404.7
TCGA-K7-A6G5-01A	66 years, male, white, stage:Stage I, alive, 512 days	404.6
TCGA-CC-5261-01A	44 years, male, asian, stage:Stage II, dead, 97 days	404.0
TCGA-DD-A4NI-01A	67 years, male, white, stage:Stage II, alive, 816 days	402.9
TCGA-G3-A25U-01A	63 years, female, asian, stage:Stage I, alive, 1636 days	402.6
TCGA-RC-A6M4-01A	74 years, female, white, stage:Stage IIIA, alive, 22 days	402.2
TCGA-DD-AADY-01A	55 years, female, asian, stage:Stage I, alive, 555 days	402.0
TCGA-ED-A66X-01A	35 years, male, asian, stage:Stage IIIA, alive, 406 days	401.6
TCGA-DD-A113-01A	55 years, female, white, stage:Stage II, alive, 2425 days	399.6
TCGA-ZP-A9D0-01A	67 years, female, black or african american, stage:'--, alive, 1091 days	398.5
TCGA-DD-AAD6-01A	66 years, male, asian, stage:Stage IIIA, alive, 672 days	394.0
TCGA-G3-AAV0-01A	58 years, male, asian, stage:Stage I, alive, 476 days	392.5
TCGA-G3-A25V-01A	68 years, male, white, stage:Stage I, alive, 860 days	392.3
TCGA-DD-A3A8-01A	75 years, male, white, stage:Stage II, dead, 11 days	390.5
TCGA-DD-AACW-01A	43 years, male, asian, stage:Stage I, alive, 1424 days	389.3
TCGA-EP-A2KB-01A	46 years, female, white, stage:Stage I, dead, 596 days	388.1
TCGA-DD-A4NE-01A	75 years, female, white, stage:Stage IIIA, dead, 660 days	388.1
TCGA-UB-A7MB-01A	24 years, male, white, stage:Stage II, alive, 601 days	385.6
TCGA-FV-A4ZP-01A	78 years, male, white, stage:Stage IIIA, dead, 2486 days	383.9
TCGA-CC-A7IH-01A	58 years, male, asian, stage:Stage IIIA, alive, 365 days	382.0
TCGA-EP-A26S-01A	70 years, male, white, stage:Stage I, alive, 608 days	381.4
TCGA-G3-A5SM-01A	58 years, male, white, stage:Stage II, alive, 520 days	380.4
TCGA-UB-A7MA-01A	62 years, female, white, stage:Stage II, alive, 848 days	380.2
TCGA-CC-A7IK-01A	59 years, male, asian, stage:Stage IIIA, dead, 262 days	379.9
TCGA-G3-A7M7-01A	65 years, male, white, stage:Stage I, alive, 361 days	379.0
TCGA-ZP-A9D1-01A	56 years, female, white, stage:'--, alive, 21 days	378.7
TCGA-DD-A39V-01A	77 years, male, white, stage:Stage II, dead, 643 days	377.3
TCGA-DD-AACN-01A	32 years, male, asian, stage:Stage I, alive, 1302 days	377.0
TCGA-FV-A2QQ-01A	80 years, male, white, stage:Stage I, alive, 729 days	375.2
TCGA-RC-A7SF-01A	66 years, male, asian, stage:Stage I, alive, 579 days	374.5
TCGA-DD-A1EC-01A	20 years, female, white, stage:Stage I, alive, 602 days	373.4
TCGA-GJ-A3OU-01A	59 years, male, white, stage:Stage I, alive, 879 days	368.9
TCGA-DD-AAD2-01A	66 years, male, asian, stage:Stage I, alive, 658 days	368.3
TCGA-G3-A3CG-01A	80 years, male, white, stage:Stage I, alive, 673 days	368.1
TCGA-XR-A8TG-01A	58 years, male, white, stage:Stage I, alive, 898 days	366.4
TCGA-MI-A75C-01A	64 years, male, white, stage:Stage I, alive, 291 days	366.1
TCGA-DD-AAEK-01A	51 years, male, asian, stage:Stage II, alive, 1067 days	365.3
TCGA-G3-A7M6-01A	60 years, female, white, stage:Stage I, alive, 632 days	361.5
TCGA-ZP-A9CV-01A	59 years, male, white, stage:'--, dead, 1088 days	361.1
TCGA-UB-A7ME-01A	51 years, male, asian, stage:Stage I, alive, 486 days	360.8
TCGA-2Y-A9HA-01A	70 years, male, white, stage:Stage II, dead, 36 days	358.4
TCGA-5C-A9VH-01A	70 years, male, white, stage:Stage I, alive, 322 days	358.2
TCGA-5R-AA1D-01A	17 years, female, white, stage:Stage IIIA, alive, 449 days	356.0
TCGA-DD-A3A4-01A	37 years, male, white, stage:Stage IIIA, dead, 612 days	355.8
TCGA-ZP-A9CY-01A	66 years, female, white, stage:'--, alive, 782 days	355.3
TCGA-DD-AAVY-01A	56 years, male, asian, stage:Stage IIIA, alive, 1970 days	354.7
TCGA-K7-A5RG-01A	66 years, male, black or african american, stage:Stage I, alive, 519 days	353.3
TCGA-DD-A4NV-01A	61 years, male, white, stage:Stage IIIA, alive, 2398 days	350.8
TCGA-DD-AAW0-01A	54 years, male, asian, stage:Stage I, alive, 2015 days	350.1
TCGA-DD-AACP-01A	64 years, male, asian, stage:Stage I, alive, 415 days	349.1
TCGA-DD-A1EH-01A	23 years, male, white, stage:Stage III, alive, 1495 days	348.3
TCGA-DD-AAVW-01A	35 years, male, asian, stage:Stage I, alive, 2317 days	346.9
TCGA-ED-A5KG-01A	60 years, female, asian, stage:Stage II, alive, 854 days	346.5
TCGA-ES-A2HT-01A	54 years, male, black or african american, stage:Stage I, dead, 438 days	346.3
TCGA-EP-A12J-01A	62 years, male, black or african american, stage:Stage I, alive, 570 days	346.3
TCGA-DD-AAW2-01A	69 years, male, asian, stage:Stage I, alive, 1855 days	345.2
TCGA-2Y-A9H7-01A	81 years, female, white, stage:Stage I, alive, 1168 days	343.3
TCGA-GJ-A9DB-01A	68 years, male, white, stage:Stage I, dead, 67 days	339.0
TCGA-BC-A5W4-01A	69 years, male, white, stage:Stage IIIA, dead, 547 days	338.3
TCGA-DD-AACT-01A	69 years, female, asian, stage:Stage I, alive, 1562 days	337.6
TCGA-DD-AADB-01A	51 years, male, asian, stage:Stage I, alive, 1242 days	337.2
TCGA-CC-5259-01A	60 years, female, asian, stage:Stage IIIC, alive, 250 days	336.0
TCGA-CC-A7II-01A	54 years, male, asian, stage:Stage IIIA, alive, 399 days	335.7
TCGA-BC-A216-01A	62 years, female, white, stage:Stage IIIA, alive, 1351 days	332.3
TCGA-DD-AAE1-01A	52 years, male, asian, stage:Stage I, alive, 552 days	332.0
TCGA-DD-A73F-01A	77 years, female, white, stage:Stage I, alive, 1085 days	331.1
TCGA-FV-A3R3-01A	38 years, female, white, stage:Stage I, dead, 366 days	328.5
TCGA-BC-A69I-01A	69 years, male, white, stage:Stage I, alive, 387 days	326.8
TCGA-G3-A6UC-01A	65 years, male, white, stage:Stage IIIB, alive, 671 days	326.1
TCGA-DD-AAD0-01A	73 years, female, asian, stage:Stage I, alive, 137 days	326.0
TCGA-DD-A1EK-01A	64 years, female, white, stage:Stage IVB, dead, 558 days	325.7
TCGA-MR-A8JO-01A	34 years, male, white, stage:Stage I, alive, 330 days	324.5
TCGA-WX-AA44-01A	64 years, female, white, stage:Stage I, alive, 615 days	324.2
TCGA-FV-A3I0-01A	76 years, female, white, stage:Stage II, alive, 848 days	323.1
TCGA-HP-A5N0-01A	90 years, female, stage:'--, dead, 752 days	322.4
TCGA-FV-A4ZQ-01A	52 years, male, white, stage:Stage I, alive, 12 days	322.3
TCGA-2Y-A9H6-01A	68 years, female, white, stage:Stage I, alive, 357 days	322.2
TCGA-DD-A1EG-01A	76 years, male, white, stage:Stage I, dead, 1372 days	321.9
TCGA-NI-A8LF-01A	74 years, male, white, stage:Stage I, alive, 799 days	321.0
TCGA-KR-A7K2-01A	64 years, male, white, stage:Stage I, alive, 829 days	320.9
TCGA-5R-AAAM-01A	65 years, female, white, stage:Stage II, dead, 46 days	320.6
TCGA-EP-A3JL-01A	76 years, male, white, stage:Stage I, alive, 303 days	319.2
TCGA-G3-A5SK-01A	58 years, male, white, stage:Stage I, alive, 744 days	319.0
TCGA-DD-AACC-01A	61 years, male, asian, stage:Stage I, dead, 1685 days	318.1
TCGA-DD-AAVZ-01A	38 years, male, asian, stage:Stage I, alive, 1900 days	317.6
TCGA-DD-AACZ-01A	63 years, female, asian, stage:Stage I, dead, 171 days	317.3
TCGA-DD-AADP-01A	45 years, male, asian, stage:Stage I, alive, 458 days	316.1
TCGA-2Y-A9H8-01A	85 years, female, white, stage:'--, dead, 633 days	314.8
TCGA-DD-AAVX-01A	38 years, male, asian, stage:Stage II, alive, 1718 days	314.7
TCGA-DD-AADK-01A	68 years, female, asian, stage:Stage II, alive, 1049 days	314.5
TCGA-DD-AADA-01A	66 years, female, asian, stage:Stage I, alive, 1233 days	310.2
TCGA-DD-AAC9-01A	51 years, male, asian, stage:Stage I, alive, 347 days	310.0
TCGA-HP-A5MZ-01A	78 years, male, stage:Stage I, dead, 91 days	307.7
TCGA-DD-A39W-01A	29 years, female, white, stage:Stage III, dead, 827 days	307.7
TCGA-ZS-A9CG-01A	55 years, male, white, stage:Stage II, alive, 341 days	305.4
TCGA-DD-A1EE-01A	73 years, male, white, stage:Stage IIIA, dead, 349 days	304.0
TCGA-DD-AAEI-01A	72 years, male, asian, stage:Stage I, alive, 1531 days	302.4
TCGA-DD-AADN-01A	59 years, male, asian, stage:Stage I, alive, 898 days	300.9
TCGA-DD-A4NS-01A	61 years, female, white, stage:Stage I, dead, 2456 days	299.3
TCGA-EP-A2KA-01A	52 years, female, white, stage:Stage IIIA, dead, 627 days	297.2
TCGA-DD-AAD3-01A	43 years, male, asian, stage:Stage I, alive, 1295 days	296.0
TCGA-G3-AAV2-01A	50 years, male, white, stage:Stage I, alive, 372 days	295.3
TCGA-ZS-A9CD-01A	73 years, male, white, stage:Stage II, dead, 1386 days	295.1
TCGA-WX-AA46-01A	61 years, male, white, stage:Stage II, alive, 756 days	294.3
TCGA-LG-A9QD-01A	68 years, male, white, stage:Stage IIIA, alive, 366 days	293.8
TCGA-FV-A3I1-01A	81 years, female, white, stage:Stage II, dead, 247 days	293.5
TCGA-ED-A8O5-01A	59 years, female, asian, stage:Stage IIIA, alive, 406 days	292.6
TCGA-MR-A520-01A	58 years, male, white, stage:Stage I, alive, 229 days	290.2
TCGA-DD-A3A2-01A	76 years, female, white, stage:Stage I, dead, 2131 days	289.6
TCGA-ED-A8O6-01A	50 years, female, asian, stage:Stage IIIA, dead, 56 days	289.1
TCGA-DD-A4NB-01A	25 years, male, white, stage:Stage I, alive, 989 days	287.4
TCGA-DD-AAD1-01A	51 years, female, asian, stage:Stage I, alive, 564 days	287.0
TCGA-G3-A3CI-01A	71 years, male, white, stage:Stage I, alive, 180 days	286.9
TCGA-2Y-A9GX-01A	68 years, male, white, stage:Stage I, alive, 2442 days	286.9
TCGA-DD-A73C-01A	65 years, female, white, stage:Stage IIIA, alive, 701 days	286.2
TCGA-DD-A4NF-01A	72 years, male, white, stage:Stage I, alive, 942 days	282.7
TCGA-DD-A4ND-01A	56 years, female, white, stage:Stage I, alive, 2746 days	282.6
TCGA-2Y-A9GV-01A	54 years, female, white, stage:Stage I, dead, 2532 days	282.2
TCGA-K7-A5RF-01A	64 years, male, white, stage:Stage I, alive, 631 days	282.1
TCGA-BC-A10X-01A	52 years, female, white, stage:Stage IIIA, dead, 770 days	281.6
TCGA-BC-A10S-01A	81 years, male, white, stage:'--, dead, 1423 days	279.3
TCGA-DD-AACY-01A	61 years, male, asian, stage:Stage I, alive, 1450 days	276.6
TCGA-YA-A8S7-01A	68 years, male, white, stage:Stage IIIA, dead, 412 days	275.9
TCGA-BC-A110-01A	51 years, female, black or african american, stage:'--, dead, 2116 days	272.8
TCGA-ED-A4XI-01A	58 years, male, asian, stage:Stage II, alive, 819 days	272.7
TCGA-ED-A66Y-01A	51 years, female, asian, stage:Stage IIIA, dead, 296 days	272.2
TCGA-DD-A4NR-01A	85 years, female, white, stage:Stage I, dead, 9 days	270.8
TCGA-RC-A6M5-01A	20 years, female, white, stage:Stage IVA, alive, 15 days	270.2
TCGA-DD-A73A-01A	71 years, male, white, stage:Stage I, alive, 728 days	269.8
TCGA-ED-A627-01A	74 years, male, white, stage:Stage I, alive, 423 days	269.5
TCGA-CC-5258-01A	48 years, male, asian, stage:Stage II, dead, 129 days	268.1
TCGA-G3-AAV3-01A	58 years, female, white, stage:Stage II, alive, 412 days	266.6
TCGA-2Y-A9H5-01A	59 years, female, white, stage:Stage I, dead, 555 days	260.3
TCGA-DD-A4NG-01A	77 years, male, white, stage:Stage IIIA, dead, 802 days	253.9
TCGA-DD-A4NK-01A	80 years, female, white, stage:Stage IIIA, dead, 1210 days	253.9
TCGA-CC-A7IE-01A	57 years, male, asian, stage:Stage IIIA, dead, 217 days	253.6
TCGA-BD-A3ER-01A	62 years, male, white, stage:Stage II, alive, 1115 days	252.4
TCGA-UB-AA0V-01A	69 years, female, white, stage:Stage I, alive, 314 days	251.6
TCGA-XR-A8TE-01A	16 years, male, white, stage:Stage IIIA, alive, 925 days	251.0
TCGA-2Y-A9GW-01A	64 years, male, white, stage:Stage I, dead, 1271 days	248.5
TCGA-G3-A7M8-01A	31 years, male, asian, stage:Stage I, alive, 430 days	246.0
TCGA-2Y-A9GT-01A	51 years, male, white, stage:Stage I, dead, 1624 days	240.8
TCGA-DD-AACQ-01A	50 years, male, asian, stage:Stage II, dead, 432 days	236.1
TCGA-ED-A97K-01A	54 years, male, asian, stage:Stage IIIA, alive, 6 days	229.9
TCGA-DD-A1EF-01A	57 years, female, white, stage:Stage I, dead, 394 days	223.1
TCGA-DD-AAE7-01A	72 years, male, asian, stage:Stage I, alive, 644 days	211.3
TCGA-DD-A1ED-01A	68 years, male, white, stage:Stage I, alive, 2301 days	191.7
TCGA-DD-A4NL-01A	46 years, male, white, stage:Stage I, alive, 1711 days	182.9
TCGA-BC-A10R-01A	66 years, female, white, stage:'--, dead, 308 days	147.9
TCGA-WJ-A86L-01A	68 years, female, white, stage:Stage I, alive, 345 days	142.3
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
627	Tumor	1.6
227	Tumor	0.8
571	Tumor	0.7
448	Normal	0.6
513	Tumor	0.6
745	Tumor	0.6
636	Normal	0.5
714	Normal	0.5
452	Normal	0.5
756	Normal	0.5
786	Normal	0.5
862	Normal	0.5
722	Normal	0.5
328	Normal	0.5
922	Normal	0.5
868	Normal	0.5
356	Normal	0.5
128	Normal	0.5
713	Tumor	0.4
462	Normal	0.4
534	Normal	0.4
648	Normal	0.4
172	Normal	0.4
698	Normal	0.4
1027	Tumor	0.4
488	Normal	0.4
858	Normal	0.4
882	Normal	0.4
742	Normal	0.4
864	Normal	0.4
746	Normal	0.4
944	Normal	0.4
232	Normal	0.4
912	Normal	0.4
723	Tumor	0.4
1032	Normal	0.4
738	Normal	0.4
615	Tumor	0.4
162	Normal	0.4
938	Normal	0.4
388	Normal	0.4
278	Normal	0.4
412	Normal	0.4
394	Normal	0.4
258	Normal	0.4
423	Tumor	0.4
914	Normal	0.4
1043	Tumor	0.4
564	Normal	0.4
1045	Tumor	0.4
314	Normal	0.4
424	Normal	0.4
1046	Normal	0.4
616	Normal	0.3
344	Normal	0.3
436	Normal	0.3
618	Normal	0.3
298	Normal	0.3
228	Normal	0.3
286	Normal	0.3
823	Tumor	0.3
728	Normal	0.3
1025	Tumor	0.3
414	Normal	0.3
358	Normal	0.3
416	Normal	0.3
428	Normal	0.3
484	Normal	0.3
546	Normal	0.3
111	Normal	0.3
866	Normal	0.3
824	Normal	0.3
426	Normal	0.3
222	Normal	0.3
818	Normal	0.3
514	Normal	0.3
472	Normal	0.3
1026	Normal	0.3
196	Normal	0.3
1022	Normal	0.3
568	Normal	0.3
114	Normal	0.3
958	Normal	0.3
1014	Normal	0.2
852	Normal	0.2
411	Tumor	0.2
964	Normal	0.2
186	Normal	0.2
148	Normal	0.2
572	Normal	0.2
342	Normal	0.2
376	Normal	0.2
628	Normal	0.2
686	Normal	0.2
984	Normal	0.2
392	Normal	0.2
867	Tumor	0.2
422	Normal	0.2
982	Normal	0.2
924	Normal	0.2
364	Normal	0.2
981	Tumor	0.2
214	Normal	0.2
132	Normal	0.2
695	Tumor	0.2
515	Tumor	0.2
284	Normal	0.2
518	Normal	0.2
926	Normal	0.2
696	Normal	0.2
528	Normal	0.2
954	Normal	0.2
666	Normal	0.2
526	Normal	0.2
487	Tumor	0.2
1041	Tumor	0.2
465	Tumor	0.2
716	Normal	0.2
1042	Normal	0.2
494	Normal	0.2
664	Normal	0.2
635	Tumor	0.2
361	Tumor	0.2
976	Normal	0.2
874	Normal	0.2
482	Normal	0.2
1028	Normal	0.2
138	Normal	0.2
816	Normal	0.2
642	Normal	0.2
212	Normal	0.2
352	Normal	0.2
466	Normal	0.2
446	Normal	0.1
464	Normal	0.1
923	Tumor	0.1
925	Tumor	0.1
878	Normal	0.1
363	Tumor	0.1
257	Tumor	0.1
978	Normal	0.1
354	Normal	0.1
218	Normal	0.1
558	Normal	0.1
741	Tumor	0.1
272	Normal	0.1
968	Normal	0.1
136	Normal	0.1
396	Normal	0.1
918	Normal	0.1
474	Normal	0.1
432	Normal	0.1
1016	Normal	0.1
955	Tumor	0.1
956	Normal	0.1
785	Tumor	0.1
662	Normal	0.1
537	Tumor	0.1
554	Normal	0.1
262	Normal	0.1
468	Normal	0.1
393	Tumor	0.1
727	Tumor	0.1
778	Normal	0.1
142	Normal	0.1
386	Normal	0.1
916	Normal	0.1
362	Normal	0.1
366	Normal	0.1
1044	Normal	0.1
332	Normal	0.1
327	Tumor	0.1
461	Tumor	0.1
538	Normal	0.0
368	Normal	0.0
755	Tumor	0.0
915	Tumor	0.0
312	Normal	0.0
884	Normal	0.0
516	Normal	0.0
966	Normal	0.0
188	Normal	0.0
863	Tumor	0.0
744	Normal	0.0
911	Tumor	0.0
146	Normal	0.0
145	Tumor	0.0
126	Normal	0.0
224	Normal	0.0
353	Tumor	0.0
113	Tumor	0.0
574	Normal	0.0
672	Normal	0.0
873	Tumor	0.0
456	Normal	0.0
952	Normal	0.0
451	Tumor	0.0
953	Tumor	0.0
524	Normal	0.0
1013	Tumor	0.0
365	Tumor	-0.1
517	Tumor	-0.1
444	Normal	-0.1
268	Normal	-0.1
1031	Tumor	-0.1
443	Tumor	-0.1
478	Normal	-0.1
557	Tumor	-0.1
415	Tumor	-0.1
481	Tumor	-0.1
434	Normal	-0.1
124	Normal	-0.1
483	Tumor	-0.1
498	Normal	-0.1
384	Normal	-0.1
563	Tumor	-0.2
137	Tumor	-0.2
567	Tumor	-0.2
492	Normal	-0.2
967	Tumor	-0.2
525	Tumor	-0.2
553	Tumor	-0.2
231	Tumor	-0.2
261	Tumor	-0.2
427	Tumor	-0.2
112	Tumor	-0.2
527	Tumor	-0.2
617	Tumor	-0.2
737	Tumor	-0.2
223	Tumor	-0.2
937	Tumor	-0.2
161	Tumor	-0.2
341	Tumor	-0.2
721	Tumor	-0.2
477	Tumor	-0.2
425	Tumor	-0.3
523	Tumor	-0.3
491	Tumor	-0.3
777	Tumor	-0.3
861	Tumor	-0.3
267	Tumor	-0.3
187	Tumor	-0.3
433	Tumor	-0.3
857	Tumor	-0.3
536	Normal	-0.3
697	Tumor	-0.3
921	Tumor	-0.3
195	Tumor	-0.3
217	Tumor	-0.3
171	Tumor	-0.4
743	Tumor	-0.4
533	Tumor	-0.4
135	Tumor	-0.4
573	Tumor	-0.4
313	Tumor	-0.4
192	Normal	-0.4
851	Tumor	-0.4
221	Tumor	-0.4
127	Tumor	-0.4
431	Tumor	-0.4
641	Tumor	-0.4
663	Tumor	-0.4
815	Tumor	-0.4
191	Tumor	-0.4
715	Tumor	-0.4
185	Tumor	-0.4
814	Normal	-0.4
297	Tumor	-0.4
813	Tumor	-0.4
357	Tumor	-0.4
883	Tumor	-0.4
421	Tumor	-0.4
1015	Tumor	-0.5
647	Tumor	-0.5
957	Tumor	-0.5
355	Tumor	-0.5
271	Tumor	-0.5
125	Tumor	-0.5
951	Tumor	-0.5
141	Tumor	-0.5
1021	Tumor	-0.5
387	Tumor	-0.5
685	Tumor	-0.5
913	Tumor	-0.5
473	Tumor	-0.5
147	Tumor	-0.5
213	Tumor	-0.5
455	Tumor	-0.5
285	Tumor	-0.6
963	Tumor	-0.6
665	Tumor	-0.6
471	Tumor	-0.6
447	Tumor	-0.6
977	Tumor	-0.6
493	Tumor	-0.6
413	Tumor	-0.6
975	Tumor	-0.7
983	Tumor	-0.7
917	Tumor	-0.7
383	Tumor	-0.7
881	Tumor	-0.7
375	Tumor	-0.7
497	Tumor	-0.7
435	Tumor	-0.7
463	Tumor	-0.7
943	Tumor	-0.7
865	Tumor	-0.7
467	Tumor	-0.7
445	Tumor	-0.8
367	Tumor	-0.8
391	Tumor	-0.8
817	Tumor	-0.8
671	Tumor	-0.8
385	Tumor	-0.8
351	Tumor	-0.9
311	Tumor	-0.9
535	Tumor	-0.9
277	Tumor	-0.9
395	Tumor	-0.9
211	Tumor	-1.0
661	Tumor	-1.0
965	Tumor	-1.0
724	Normal	-1.0
877	Tumor	-1.0
331	Tumor	-1.1
131	Tumor	-1.1
123	Tumor	-1.2
283	Tumor	-1.3
343	Tumor	-1.3
545	Tumor	-1.4
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA042777	Antibody HPA048459
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS