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ATP5PD
HPA
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  • ATP5PD
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ATP5PD
Synonyms ATP5H, ATP5JD, ATPQ
Gene descriptioni

Full gene name according to HGNC.

ATP synthase peripheral stalk subunit d
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband q25.1
Chromosome location (bp) 75038863 - 75046985
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000167863 (version 109)
Entrez gene 10476
HGNC HGNC:845
UniProt O75947 (UniProt - Evidence at protein level)
neXtProt NX_O75947
GeneCards ATP5PD
Antibodypedia ATP5PD antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Hydrogen ion transport, Ion transport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The F1 complex consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled in a ratio of 3 alpha, 3 beta, and a single representative of the other 3. The Fo seems to have nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the d subunit of the Fo complex. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. In addition, three pseudogenes are located on chromosomes 9, 12 and 15. [provided by RefSeq, Jun 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ATP5PD-201
ENSP00000301587
ENST00000301587
O75947
[Direct mapping] ATP synthase subunit d, mitochondrial
Show all
Metabolic proteins
Transporters
   Primary Active Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000274 [mitochondrial proton-transporting ATP synthase, stator stalk]
GO:0000276 [mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005753 [mitochondrial proton-transporting ATP synthase complex]
GO:0006811 [ion transport]
GO:0015078 [proton transmembrane transporter activity]
GO:0015986 [proton motive force-driven ATP synthesis]
GO:0016020 [membrane]
GO:0042776 [proton motive force-driven mitochondrial ATP synthesis]
GO:0045263 [proton-transporting ATP synthase complex, coupling factor F(o)]
GO:0046933 [proton-transporting ATP synthase activity, rotational mechanism]
GO:1902600 [proton transmembrane transport]
Show all
161 aa
18.5 kDa
No 0
ATP5PD-202
ENSP00000344230
ENST00000344546
O75947
[Direct mapping] ATP synthase subunit d, mitochondrial
Show all
Metabolic proteins
Transporters
   Primary Active Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000274 [mitochondrial proton-transporting ATP synthase, stator stalk]
GO:0000276 [mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005753 [mitochondrial proton-transporting ATP synthase complex]
GO:0006811 [ion transport]
GO:0015078 [proton transmembrane transporter activity]
GO:0015986 [proton motive force-driven ATP synthesis]
GO:0016020 [membrane]
GO:0042776 [proton motive force-driven mitochondrial ATP synthesis]
GO:0045263 [proton-transporting ATP synthase complex, coupling factor F(o)]
GO:0046933 [proton-transporting ATP synthase activity, rotational mechanism]
GO:1902600 [proton transmembrane transport]
Show all
137 aa
15.8 kDa
No 0

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