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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
115.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 67.4
1984
Male, age 76, both hemispheres
85.5
2301
Female, age 85, both hemispheres
81.1
2090
Male, age 80, both hemispheres
52.1
2188
Female, age 91, both hemispheres
50.9
Dorsal cochlear nucleus nTPM: 82.6
2058
Male, age 76, both hemispheres
92.0
2370
Male, age 61, both hemispheres
90.1
2802
Male, age 74, right hemisphere
86.5
2187
Female, age 91, both hemispheres
74.2
2378
Male, age 80, both hemispheres
70.0
Dorsal tegmental nucleus nTPM: 83.7
1936
Male, age 76, left hemisphere
90.6
2083
Male, age 80, both hemispheres
87.8
2358
Male, age 61, both hemispheres
80.0
2326
Male, age 74, both hemispheres
76.3
Dorsolateral tegmental area nTPM: 63.3
2141
Male, age 76, both hemispheres
85.7
2654
Male, age 80, both hemispheres
81.5
2751
Female, age 85, both hemispheres
59.3
2360
Male, age 74, both hemispheres
54.0
2337
Male, age 61, both hemispheres
35.8
Kolliker-Fuse nucleus nTPM: 69.4
2163
Male, age 80, both hemispheres
83.1
2793
Female, age 91, left hemisphere
80.1
2315
Male, age 76, right hemisphere
45.0
Lateral lemniscal nuclei nTPM: 100.3
2169
Male, age 76, both hemispheres
115.4
2453
Male, age 74, right hemisphere
112.6
2320
Female, age 91, left hemisphere
104.1
2036
Male, age 80, both hemispheres
88.2
2746
Female, age 85, left hemisphere
81.3
Lateral parabrachial nucleus nTPM: 65.9
2139
Female, age 85, right hemisphere
94.6
2790
Male, age 61, both hemispheres
78.7
2013
Male, age 80, both hemispheres
64.1
2792
Male, age 76, both hemispheres
26.3
Lateral vestibular nucleus nTPM: 81.8
2184
Male, age 76, both hemispheres
90.8
2311
Male, age 80, both hemispheres
72.7
Locus coeruleus nTPM: 96.7
2162
Male, age 80, both hemispheres
115.8
2720
Male, age 74, both hemispheres
103.1
2123
Female, age 91, both hemispheres
102.7
2317
Female, age 72, unknown
102.7
1980
Male, age 76, both hemispheres
96.4
2014
Male, age 55, unknown
91.4
2788
Male, age 74, unknown
64.7
Medial parabrachial nucleus nTPM: 80.0
2156
Male, age 61, both hemispheres
105.6
2786
Male, age 76, both hemispheres
92.3
2854
Male, age 80, both hemispheres
72.5
2463
Female, age 85, right hemisphere
67.1
2170
Female, age 91, both hemispheres
62.6
Medial periolivary nuclei nTPM: 91.4
2171
Female, age 85, both hemispheres
126.0
2063
Male, age 76, both hemispheres
112.9
2458
Female, age 91, both hemispheres
87.5
2791
Male, age 74, right hemisphere
72.5
2081
Male, age 80, both hemispheres
58.1
Motor facial nucleus nTPM: 107.1
2795
Female, age 91, both hemispheres
135.5
2062
Male, age 76, both hemispheres
134.3
2327
Male, age 80, both hemispheres
130.6
2365
Male, age 74, right hemisphere
81.6
2697
Female, age 85, both hemispheres
81.6
2126
Male, age 61, both hemispheres
78.9
Motor trigeminal nucleus nTPM: 95.6
2335
Male, age 61, both hemispheres
108.0
2560
Male, age 74, both hemispheres
102.9
2079
Male, age 80, both hemispheres
90.9
2321
Female, age 91, both hemispheres
90.9
2309
Male, age 76, both hemispheres
85.1
Nuclei of the trapezoid body nTPM: 115.7
2735
Female, age 85, both hemispheres
135.3
2368
Female, age 91, both hemispheres
120.5
1983
Male, age 76, both hemispheres
116.9
2159
Male, age 61, both hemispheres
114.0
2166
Male, age 80, both hemispheres
91.7
Nucleus raphe magnus nTPM: 115.7
2172
Female, age 85, both hemispheres
149.5
2160
Male, age 61, both hemispheres
124.3
2328
Male, age 80, both hemispheres
116.0
2455
Male, age 74, both hemispheres
112.9
2459
Female, age 91, both hemispheres
97.0
2051
Male, age 76, both hemispheres
94.8
Paramedian reticular nucleus nTPM: 82.4
2313
Male, age 61, both hemispheres
111.9
2050
Female, age 85, both hemispheres
92.0
2057
Male, age 80, both hemispheres
83.3
2052
Male, age 76, both hemispheres
42.5
Pedunculopontine tegmental nucleus nTPM: 74.9
1921
Female, age 85, both hemispheres
99.6
2334
Male, age 80, both hemispheres
76.6
2338
Male, age 61, both hemispheres
48.4
Pontine nuclei nTPM: 91.9
2787
Female, age 85, both hemispheres
139.8
1968
Male, age 76, left hemisphere
127.2
1863
Male, age 55, unknown
101.9
2727
Male, age 61, right hemisphere
90.5
2115
Male, age 80, left hemisphere
79.8
2109
Female, age 72, unknown
78.6
2454
Male, age 74, left hemisphere
61.2
2319
Female, age 91, both hemispheres
56.0
Pontine raphe nucleus nTPM: 101.4
2853
Male, age 76, midline
107.9
2122
Female, age 85, midline
94.8
Posteroventral cochlear nucleus nTPM: 60.4
2752
Female, age 85, both hemispheres
108.1
2371
Male, age 61, both hemispheres
76.0
2070
Male, age 76, both hemispheres
73.0
2341
Male, age 80, both hemispheres
32.5
2135
Female, age 91, both hemispheres
12.4
Principal sensory trigeminal nucleus nTPM: 94.7
2158
Male, age 61, both hemispheres
125.2
2008
Male, age 80, left hemisphere
98.8
2324
Male, age 76, both hemispheres
82.3
2367
Female, age 91, left hemisphere
72.4
Reticular pontine nucleus, caudal nTPM: 96.2
2332
Male, age 80, right hemisphere
141.3
2457
Female, age 91, both hemispheres
92.6
2092
Male, age 76, both hemispheres
81.6
2559
Male, age 74, both hemispheres
69.1
Reticular pontine nucleus, oral nTPM: 73.5
2167
Male, age 76, both hemispheres
85.9
2012
Female, age 85, both hemispheres
80.3
2366
Female, age 91, both hemispheres
70.7
2361
Male, age 74, both hemispheres
68.1
1939
Male, age 80, both hemispheres
62.5
Reticulotegmental nucleus nTPM: 105.4
2322
Female, age 91, both hemispheres
108.1
2325
Male, age 76, both hemispheres
105.8
2333
Male, age 80, both hemispheres
103.9
2452
Male, age 74, both hemispheres
103.8
Spinal trigeminal nucleus, oral nTPM: 91.7
1978
Male, age 76, both hemispheres
100.7
2737
Female, age 85, both hemispheres
90.1
2164
Male, age 80, both hemispheres
84.4
Subcoeruleus area nTPM: 92.8
2323
Female, age 91, left hemisphere
119.7
2451
Male, age 74, both hemispheres
107.5
2089
Male, age 76, left hemisphere
104.0
1958
Male, age 80, both hemispheres
84.7
2369
Female, age 85, left hemisphere
47.9
Superior olive nTPM: 91.9
2561
Female, age 91, both hemispheres
114.9
2329
Male, age 80, right hemisphere
106.5
1875
Female, age 85, both hemispheres
91.6
2020
Male, age 76, both hemispheres
80.3
2364
Male, age 74, right hemisphere
66.1
Ventral periolivary nuclei nTPM: 104.8
2130
Female, age 85, both hemispheres
122.8
2165
Male, age 80, both hemispheres
119.4
2794
Female, age 91, left hemisphere
110.1
2023
Male, age 76, both hemispheres
66.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 87.5
2449
Male, age 74, both hemispheres
103.7
2456
Female, age 91, both hemispheres
97.4
2161
Male, age 80, both hemispheres
93.6
1959
Male, age 76, both hemispheres
90.6
2840
Female, age 85, both hemispheres
76.4
2359
Male, age 61, both hemispheres
63.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.1
Pig sample
Sample description
nTPM
Pons nTPM: 32.1
Samples: 4
Max nTPM: 44.7
Min nTPM: 24.1
Sample A
Female
44.7
Sample B
Female
30.8
Sample C
Male
28.7
Sample D
Male
24.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
