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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:190.4 nTPM
HPA:86.7 nTPM
GTEx:190.4 nTPM
FANTOM5:356.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041411
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.7
overview
Male, age 65
Small intestine sample 232
nTPM: 108.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 92.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 77.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 68

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 190.4
Samples: 187

Max nTPM: 362.1
Min nTPM: 32.0
Std nTPM: 53.4
Median nTPM: 189.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 362.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 318.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 309.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 306.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 293.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 292.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 283.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 283.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 280.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 277.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 275.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 271.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 270.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 267.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 267.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 266.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 265.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 263.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 263.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 261.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 257.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 252.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 252.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 252.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 251.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 250.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 250.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 250.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 249.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 249.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 247.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 246.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 245.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 241.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 239.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 238.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 237.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 235.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 235.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 235.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 234.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 229.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 229.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 229.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 229.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 227.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 226.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 225.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 224.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 221.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 221.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 220.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 219.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 217.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 216.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 216.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 213.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 213.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 211.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 210.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 210.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 209.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 208.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 208.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 208.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 207.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 206.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 206.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 206.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 205.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 203.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 201.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 201.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 200.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 200.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 198.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 198.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 198.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 198.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 197.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 197.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 197.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 196.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 195.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 194.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 194.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 193.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 193.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 192.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 191.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 191.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 190.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 189.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 189.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 188.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 188.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 188.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 188.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 188.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 188.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 184.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 184.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 184.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 183.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 183.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 182.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 182.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 176.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 176.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 176.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 174.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 172.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 172.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 172.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 171.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 169.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 169.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 168.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 167.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 166.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 166.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 166.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 164.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 164.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 164.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 163.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 162.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 160.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 160.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 159.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 158.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 158.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 158.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 158.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 157.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 157.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 157.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 157.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 155.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 153.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 153.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 152.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 151.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 150.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 150.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 150.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 148.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 148.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 148.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 147.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 146.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 145.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 145.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 145.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 145.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 144.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 143.8
GTEX-1192X-2526-SM-59868 50-59 years, male 143.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 140.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 139.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 139.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 138.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 137.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 136.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 135.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 135.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 134.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 134.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 132.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 126.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 126.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 125.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 125.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 123.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 121.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 119.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 110.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 108.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 105.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 102.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 96.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 92.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 83.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 66.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 49.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 39.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 32.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 356.3
FF:10024-101D6 15,40,85 years, mixed 356.3

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