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NAALADL1
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  • NAALADL1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:96.6 nTPM
HPA:89.0 nTPM
GTEx:96.6 nTPM
FANTOM5:224.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047123
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli Not detected
Goblet cells Medium
Paneth cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.0
overview
Male, age 65
Small intestine sample 232
nTPM: 36.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 210.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 52.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 57.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 96.6
Samples: 187

Max nTPM: 614.9
Min nTPM: 4.6
Std nTPM: 109.4
Median nTPM: 38.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 614.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 509.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 434.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 379.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 365.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 341.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 337.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 327.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 311.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 295.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 294.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 289.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 281.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 277.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 276.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 274.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 270.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 268.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 266.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 263.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 257.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 255.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 255.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 243.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 240.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 236.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 235.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 229.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 223.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 212.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 208.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 205.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 197.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 197.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 196.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 193.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 190.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 189.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 186.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 178.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 170.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 161.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 160.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 158.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 158.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 153.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 149.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 142.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 139.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 137.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 136.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 131.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 130.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 128.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 125.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 125.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 120.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 120.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 117.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 114.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 110.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 110.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 103.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 97.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 94.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 94.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 94.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 92.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 92.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 91.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 91.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 90.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 88.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 83.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 83.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 81.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 81.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 79.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 78.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 77.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 76.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 76.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 73.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 71.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 69.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 58.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 58.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 58.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 53.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 53.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 52.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 50.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 41.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 38.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 36.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 36.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 35.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 33.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 33.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 32.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 32.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 31.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 31.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 27.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 25.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 25.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 24.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 24.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 24.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 23.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 23.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 23.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 22.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 22.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 21.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 21.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 21.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 20.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 19.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 19.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 18.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 18.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 18.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 18.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 18.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 18.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 18.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 17.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 17.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 17.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 17.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 17.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 17.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 17.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 17.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 17.0
GTEX-1192X-2526-SM-59868 50-59 years, male 16.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 16.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 16.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 16.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 16.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 16.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 15.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 15.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 15.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 15.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 15.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 15.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 15.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 14.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 14.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 14.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 14.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 14.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 14.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 13.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 13.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 13.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 13.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 13.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 13.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 12.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 12.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 12.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 12.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 12.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 12.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 11.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 11.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 11.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 11.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 11.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 11.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 11.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 10.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 10.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 10.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 10.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 10.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 10.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 10.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 9.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 9.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 8.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 8.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 6.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

224.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 224.4
FF:10024-101D6 15,40,85 years, mixed 224.4

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