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SCARA5
HPA
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  • SCARA5
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SCARA5
Synonyms FLJ23907, MGC45780, NET33
Gene descriptioni

Full gene name according to HGNC.

Scavenger receptor class A member 5
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 8
Cytoband p21.1
Chromosome location (bp) 27869883 - 27992673
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000168079 (version 109)
Entrez gene 286133
HGNC HGNC:28701
UniProt Q6ZMJ2 (UniProt - Evidence at protein level)
neXtProt NX_Q6ZMJ2
GeneCards SCARA5
Antibodypedia SCARA5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Ferritin receptor that mediates non-transferrin-dependent delivery of iron. Mediates cellular uptake of ferritin-bound iron by stimulating ferritin endocytosis from the cell surface with consequent iron delivery within the cell. Delivery of iron to cells by ferritin is required for the development of specific cell types, suggesting the existence of cell type-specific mechanisms of iron traffic in organogenesis, which alternatively utilize transferrin or non-transferrin iron delivery pathways. Ferritin mediates iron uptake in capsule cells of the developing kidney. Preferentially binds ferritin light chain (FTL) compared to heavy chain (FTH1).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Receptor
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Iron transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Iron
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable ferritin receptor activity. Predicted to be involved in several processes, including cellular iron ion homeostasis; iron ion transmembrane transport; and protein homotrimerization. Predicted to act upstream of or within cellular response to heat. Predicted to be located in cell surface. Predicted to be integral component of plasma membrane. Predicted to be active in external side of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SCARA5-201
ENSP00000346990
ENST00000354914
Q6ZMJ2
[Direct mapping] Scavenger receptor class A member 5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006811 [ion transport]
GO:0006879 [cellular iron ion homeostasis]
GO:0006897 [endocytosis]
GO:0009897 [external side of plasma membrane]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0034605 [cellular response to heat]
GO:0034755 [iron ion transmembrane transport]
GO:0055072 [iron ion homeostasis]
GO:0070207 [protein homotrimerization]
GO:0070287 [ferritin receptor activity]
Show all
495 aa
54 kDa
No 1
SCARA5-202
ENSP00000369746
ENST00000380385
Q6ZMJ2
[Direct mapping] Scavenger receptor class A member 5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006879 [cellular iron ion homeostasis]
GO:0006897 [endocytosis]
GO:0009897 [external side of plasma membrane]
GO:0016020 [membrane]
GO:0034755 [iron ion transmembrane transport]
GO:0055072 [iron ion homeostasis]
GO:0070207 [protein homotrimerization]
GO:0070287 [ferritin receptor activity]
Show all
270 aa
28.9 kDa
No 1
SCARA5-203
ENSP00000430713
ENST00000518030
Q6ZMJ2
[Direct mapping] Scavenger receptor class A member 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005044 [scavenger receptor activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006879 [cellular iron ion homeostasis]
GO:0006897 [endocytosis]
GO:0009897 [external side of plasma membrane]
GO:0016020 [membrane]
GO:0034755 [iron ion transmembrane transport]
GO:0055072 [iron ion homeostasis]
GO:0070207 [protein homotrimerization]
GO:0070287 [ferritin receptor activity]
Show all
357 aa
38.7 kDa
No 0
SCARA5-204
ENSP00000428663
ENST00000524352
Q6ZMJ2
[Direct mapping] Scavenger receptor class A member 5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006879 [cellular iron ion homeostasis]
GO:0006897 [endocytosis]
GO:0009897 [external side of plasma membrane]
GO:0016020 [membrane]
GO:0034755 [iron ion transmembrane transport]
GO:0055072 [iron ion homeostasis]
GO:0070207 [protein homotrimerization]
GO:0070287 [ferritin receptor activity]
Show all
400 aa
43.3 kDa
No 1

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