MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.4 nTPM
HPA Brain:64.0 nTPM
GTEx:92.4 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:88.0 nTPM
Mouse:180.8 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.1
1870 Female, age 42, unknown 64.9
2411 Female, age 72, unknown 64.3
2019 Male, age 18, unknown 62.4
1827 Male, age 72, unknown 61.7
1833 Male, age 53, unknown 57.6
2219 Male, age 76, both hemispheres 54.3
2828 Female, age 72, unknown 54.3
1830 Male, age 51, unknown 53.2
2586 Male, age 75, left hemisphere 50.9
2666 Male, age 74, left hemisphere 47.9
Dorsal raphe nucleus
nTPM: 64.0
2298 Female, age 72, unknown 77.6
2750 Male, age 76, both hemispheres 65.1
2047 Male, age 72, unknown 61.3
1828 Male, age 53, unknown 59.3
2016 Female, age 72, unknown 56.6
Inferior colliculus
nTPM: 63.3
2097 Female, age 72, unknown 69.4
1890 Male, age 53, unknown 64.4
1848 Female, age 42, unknown 61.3
2849 Male, age 72, unknown 58.0
Median raphe nucleus
nTPM: 59.7
2220 Male, age 76, midline 59.7
Periaquaductal grey, anterior
nTPM: 62.5
2502 Female, age 75, unknown 65.5
1947 Male, age 18, unknown 64.5
1795 Male, age 51, unknown 57.6
Periaquaductal grey, dorsal
nTPM: 55.4
1840 Male, age 53, unknown 64.3
2464 Female, age 72, unknown 55.5
2850 Male, age 76, both hemispheres 52.3
1831 Male, age 72, unknown 49.6
Periaquaductal grey, lateral
nTPM: 57.7
2272 Male, age 74, both hemispheres 67.2
2053 Male, age 18, unknown 53.1
2140 Male, age 76, both hemispheres 52.8
Pretectal area
nTPM: 60.8
2273 Male, age 74, both hemispheres 75.3
1944 Female, age 72, unknown 68.2
2224 Female, age 72, unknown 65.7
1817 Female, age 42, unknown 64.9
2007 Male, age 72, unknown 64.6
1816 Male, age 51, unknown 62.1
2667 Female, age 75, unknown 59.4
1815 Male, age 53, unknown 59.0
2825 Male, age 18, unknown 55.8
2407 Male, age 75, both hemispheres 49.3
2316 Male, age 76, right hemisphere 44.8
Red nucleus
nTPM: 56.3
1821 Female, age 72, unknown 68.1
1865 Male, age 51, unknown 59.2
1954 Female, age 42, unknown 58.3
2785 Male, age 18, unknown 57.7
2769 Male, age 72, unknown 57.2
1904 Male, age 53, unknown 57.0
2227 Male, age 72, unknown 57.0
2503 Female, age 72, unknown 56.6
2725 Female, age 75, unknown 54.4
2823 Male, age 76, right hemisphere 52.1
2588 Male, age 74, left hemisphere 51.1
2584 Male, age 75, left hemisphere 46.6
Substantia nigra
nTPM: 62.9
1916 Female, age 42, unknown 76.5
1851 Male, age 51, unknown 74.4
2241 Male, age 72, unknown 72.6
1889 Female, age 72, unknown 65.7
2699 Male, age 18, unknown 63.2
1941 Male, age 53, unknown 60.9
2409 Female, age 72, unknown 55.8
2665 Male, age 74, both hemispheres 55.3
2590 Female, age 75, unknown 54.5
2583 Male, age 75, right hemisphere 49.7
Superior colliculus
nTPM: 56.2
2587 Male, age 74, left hemisphere 65.8
2668 Female, age 75, unknown 63.6
1796 Male, age 53, unknown 60.7
1895 Male, age 76, right hemisphere 59.2
2087 Female, age 72, unknown 55.3
2261 Male, age 18, unknown 54.9
1839 Male, age 51, unknown 54.1
1913 Female, age 42, unknown 53.6
1995 Male, age 72, unknown 49.9
2664 Male, age 75, both hemispheres 45.2
Ventral tegmental area
nTPM: 62.9
2410 Female, age 72, unknown 74.5
1915 Female, age 42, unknown 70.0
2223 Female, age 72, unknown 61.5
2218 Male, age 76, both hemispheres 61.3
1942 Male, age 51, unknown 57.6
2021 Male, age 53, unknown 52.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 92.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.4
Samples: 139

Max nTPM: 145.8
Min nTPM: 55.5
Std nTPM: 14.9
Median nTPM: 90.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 145.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 143.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 124.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 121.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 121.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 120.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 119.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 119.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 118.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 118.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 115.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.0
Samples: 4

Max nTPM: 113.8
Min nTPM: 62.9
Sample A Female 113.8
Sample B Female 73.8
Sample C Male 97.5
Sample D Male 62.9
Midbrain
nTPM: 88.1
Samples: 4

Max nTPM: 94.6
Min nTPM: 80.1
Sample A Female 94.6
Sample B Female 89.3
Sample C Male 88.2
Sample D Male 80.1
Periaqueductal gray
nTPM: 77.5
Samples: 3

Max nTPM: 90.0
Min nTPM: 64.4
Sample B Female 78.2
Sample C Male 90.0
Sample D Male 64.4
Superior colliculi
nTPM: 87.8
Samples: 4

Max nTPM: 98.4
Min nTPM: 71.6
Sample A Female 98.4
Sample B Female 71.6
Sample C Male 97.4
Sample D Male 83.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 180.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 180.8
Samples: 4

Max nTPM: 191.9
Min nTPM: 172.5
Sample A Male 191.9
Sample B Male 180.6
Sample C Female 172.5
Sample D Female 178.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
75695664 Antisense, RP_060518_04_D03, Mouse strain C57BL/6J (56 days, male) 9.6

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