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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
30.8
nTPM
HPA Brain:
46.5
nTPM
GTEx:
30.8
nTPM
Pig:
29.3
nTPM
Mouse:
102.8
nTPM
Allen mouse:
11.6
Expression energy
AMYGDALA - Annotated protein expression
Pending normal tissue analysis
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.5
Sample id
Sample description
nTPM
Amygdala nTPM: 14.7
2517
Female, age 94, left hemisphere
33.0
1987
Female, age 91, left hemisphere
19.2
2514
Male, age 75, right hemisphere
15.1
2695
Female, age 67, right hemisphere
3.6
2814
Male, age 76, right hemisphere
2.6
Basal amygdala nTPM: 46.5
2685
Female, age 94, left hemisphere
57.8
2827
Female, age 67, right hemisphere
57.5
2243
Female, age 91, right hemisphere
54.6
2110
Male, age 80, left hemisphere
49.1
2609
Male, age 75, right hemisphere
39.8
1955
Male, age 76, both hemispheres
20.5
Central amygdala nTPM: 27.4
2826
Female, age 94, left hemisphere
57.7
2239
Male, age 80, left hemisphere
38.6
2515
Male, age 75, right hemisphere
22.3
2701
Female, age 91, right hemisphere
17.4
1905
Male, age 76, both hemispheres
0.9
Corticomedial amygdala nTPM: 45.4
2829
Male, age 80, left hemisphere
85.6
2535
Female, age 67, right hemisphere
59.1
2242
Female, age 91, right hemisphere
37.2
2428
Male, age 75, right hemisphere
36.1
2429
Female, age 94, left hemisphere
34.0
2240
Male, age 76, both hemispheres
20.4
Lateral amygdala nTPM: 31.8
2534
Female, age 94, left hemisphere
68.2
2256
Male, age 80, left hemisphere
53.9
2255
Female, age 91, right hemisphere
25.4
2830
Female, age 67, right hemisphere
20.5
1883
Male, age 76, both hemispheres
12.4
2516
Male, age 75, right hemisphere
10.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 30.8
Samples: 152
Max nTPM: 113.4
Min nTPM: 1.2
Std nTPM: 20.0
Median nTPM: 27.9
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
102.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 102.9
Samples: 4
Max nTPM: 108.9
Min nTPM: 97.0
Sample A
Male
101.4
Sample B
Male
97.0
Sample C
Female
108.9
Sample D
Female
104.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
