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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:138.7 nTPM
GTEx:138.7 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Pig:64.3 nTPM
Mouse:46.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 138.7
Samples: 105

Max nTPM: 266.4
Min nTPM: 53.0
Std nTPM: 44.6
Median nTPM:
32_1 67 years, male 266.4
415_1 77 years, female 237.5
229_1 69 years, female 232.3
162_1 79 years, female 223.6
81_1 67 years, male 222.0
347_1 72 years, male 221.9
237_1 82 years, male 211.2
217_1 76 years, male 206.6
389_1 86 years, female 206.5
126_1 63 years, male 206.4
466_1 57 years, female 204.6
447_1 81 years, male 201.3
266_1 85 years, male 200.9
352_1 62 years, male 200.2
35_1 74 years, female 196.9
375_1 74 years, female 192.8
349_1 83 years, male 191.1
142_1 61 years, female 189.3
315_1 62 years, female 186.1
99_1 64 years, male 179.2
379_1 60 years, male 179.0
499_1 55 years, female 178.1
6_1 73 years, female 177.7
324_1 76 years, male 177.0
265_1 87 years, male 176.1
172_1 72 years, female 175.1
396_1 62 years, male 174.7
153_1 70 years, female 168.6
386_1 76 years, male 167.3
43_1 64 years, female 166.8
414_1 84 years, female 162.6
9_1 66 years, female 160.0
405_1 91 years, male 152.8
286_1 68 years, female 150.8
119_1 70 years, female 149.3
319_1 81 years, male 149.0
355_1 70 years, female 148.4
316_1 62 years, male 147.9
115_1 83 years, male 146.3
490_1 67 years, female 143.6
335_1 73 years, female 142.5
517_1 88 years, male 142.4
480_1 63 years, male 141.9
317_1 60 years, male 141.5
149_1 88 years, male 141.4
189_1 76 years, male 141.2
354_1 81 years, female 139.6
526_1 61 years, male 139.4
348_1 84 years, male 137.4
491_1 89 years, female 137.4
313_1 79 years, female 133.3
321_1 62 years, female 133.1
394_1 75 years, female 130.4
42_1 85 years, male 129.1
251_1 78 years, male 128.1
404_1 82 years, female 127.1
264_1 73 years, female 127.0
318_1 68 years, male 126.8
356_1 87 years, female 125.7
452_1 88 years, female 125.6
503_1 68 years, male 124.9
246_1 77 years, male 123.9
468_1 89 years, male 123.0
413_1 59 years, female 122.3
117_1 61 years, male 121.9
376_1 75 years, female 121.7
288_1 66 years, female 121.1
425_1 59 years, female 119.8
17_1 71 years, male 117.1
137_1 83 years, male 116.2
377_1 82 years, female 114.9
384_1 83 years, male 114.7
218_1 71 years, female 113.6
254_1 77 years, female 111.5
18_1 88 years, male 107.1
518_1 75 years, female 106.4
406_1 79 years, male 106.2
109_1 81 years, female 105.4
506_1 65 years, male 104.9
145_1 84 years, male 104.2
120_1 70 years, female 103.7
320_1 89 years, female 103.2
291_1 76 years, male 102.8
311_1 78 years, male 101.4
139_1 64 years, female 100.4
314_1 67 years, male 98.5
501_1 88 years, male 97.4
243_1 75 years, male 97.1
292_1 71 years, male 95.2
4_1 88 years, female 93.7
177_1 74 years, male 93.4
353_1 82 years, female 92.5
89_1 63 years, male 91.3
350_1 84 years, female 89.6
351_1 91 years, male 87.8
163_1 78 years, male 80.6
495_1 57 years, female 76.1
173_1 67 years, male 75.6
307_1 66 years, female 74.3
308_1 70 years, female 73.0
295_1 61 years, female 72.9
2_1 77 years, female 71.2
293_1 68 years, female 61.4
322_1 76 years, male 57.4
41_1 94 years, female 53.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 66.3
FF:10030-101E3 24-65 years, mixed 66.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.3
Pig sample Sample description nTPM
Retina
nTPM: 64.4
Samples: 4

Max nTPM: 83.9
Min nTPM: 47.9
Sample A Female 58.7
Sample B Female 47.9
Sample C Male 83.9
Sample D Male 66.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.2
Mouse sample Sample description nTPM
Retina
nTPM: 46.2
Samples: 4

Max nTPM: 51.4
Min nTPM: 38.2
Sample A Male 45.4
Sample B Male 51.4
Sample C Female 38.2
Sample D Female 49.7

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