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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:32.1 nTPM
HPA Brain:33.7 nTPM
GTEx:32.1 nTPM
FANTOM5:42.0 Scaled Tags Per Million
Pig:40.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 29.2
1981 Female, age 72, midline 38.6
2048 Male, age 55, midline 31.5
2194 Female, age 79, both hemispheres 26.0
2565 Male, age 75, midline 25.8
2816 Male, age 47, midline 24.2
Cervical spinal cord, dorsal horn
nTPM: 33.2
2173 Female, age 72, unknown 44.2
2296 Male, age 66, both hemispheres 38.1
2069 Male, age 47, both hemispheres 36.5
1877 Male, age 55, unknown 30.8
2297 Male, age 75, both hemispheres 29.4
2721 Male, age 90, both hemispheres 20.3
Cervical spinal cord, ventral horn
nTPM: 33.7
2098 Female, age 72, unknown 41.0
2480 Male, age 75, both hemispheres 40.3
2809 Male, age 90, both hemispheres 39.1
2295 Male, age 66, both hemispheres 29.8
2068 Male, age 55, unknown 29.6
2820 Female, age 79, both hemispheres 22.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 32.1
Samples: 159

Max nTPM: 46.9
Min nTPM: 21.1
Std nTPM: 4.8
Median nTPM: 32.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 46.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 46.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 45.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 44.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 43.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 41.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 41.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 40.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 40.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 40.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 39.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 39.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 39.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 38.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 38.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 38.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 38.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 38.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 38.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 38.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 37.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 37.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 37.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 37.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 37.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 36.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 36.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 36.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 36.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 36.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 35.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 35.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 35.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 35.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 35.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 34.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 34.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 34.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 34.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 34.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 34.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 34.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 34.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 34.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 34.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 34.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 34.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 34.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 33.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 33.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 33.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 33.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 33.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 33.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 33.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 33.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 33.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 33.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 33.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 33.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 33.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 33.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 33.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 33.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 32.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 32.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 32.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 32.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 32.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 32.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 32.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 32.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 32.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 32.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 32.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 32.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 32.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 32.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 32.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 32.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 32.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 31.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 31.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 31.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 31.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 31.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 31.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 30.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 30.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 30.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 30.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 30.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 30.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 30.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 30.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 30.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 30.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 30.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 30.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 30.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 30.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 30.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 29.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 29.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 29.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 29.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 29.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 29.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 29.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 29.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 29.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 29.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 29.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 29.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 29.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 29.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 29.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 28.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 28.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 28.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 28.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 28.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 28.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 28.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 28.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 28.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 28.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 28.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 28.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 28.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 28.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 27.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 27.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 27.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 27.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 27.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 27.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 27.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 27.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 27.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 26.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 26.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 26.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 26.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 26.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 25.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 25.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 25.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 25.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 25.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 25.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 25.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 23.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 23.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 23.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 22.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 21.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 21.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 21.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

42.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 42.0
FF:10159-103A6 76 years, female 46.0
FF:10181-103D1 60 years, female 38.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 37.6
Samples: 4

Max nTPM: 39.4
Min nTPM: 35.5
Sample A Female 38.3
Sample B Female 39.4
Sample C Male 37.3
Sample D Male 35.5
Ventral spinal cord
nTPM: 40.6
Samples: 4

Max nTPM: 45.7
Min nTPM: 35.3
Sample A Female 38.8
Sample B Female 42.6
Sample C Male 35.3
Sample D Male 45.7

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