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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:125.5 nTPM
HPA Brain:172.1 nTPM
GTEx:125.5 nTPM
FANTOM5:216.0 Scaled Tags Per Million
Pig:34.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 154.1
2194 Female, age 79, both hemispheres 193.8
2816 Male, age 47, midline 164.2
2048 Male, age 55, midline 160.5
1981 Female, age 72, midline 146.3
2565 Male, age 75, midline 105.6
Cervical spinal cord, dorsal horn
nTPM: 172.1
2296 Male, age 66, both hemispheres 277.2
2173 Female, age 72, unknown 223.1
2069 Male, age 47, both hemispheres 168.6
1877 Male, age 55, unknown 146.2
2297 Male, age 75, both hemispheres 122.0
2721 Male, age 90, both hemispheres 95.6
Cervical spinal cord, ventral horn
nTPM: 167.9
2820 Female, age 79, both hemispheres 261.9
2068 Male, age 55, unknown 215.9
2098 Female, age 72, unknown 139.4
2809 Male, age 90, both hemispheres 135.2
2480 Male, age 75, both hemispheres 132.3
2295 Male, age 66, both hemispheres 123.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 125.5
Samples: 159

Max nTPM: 304.3
Min nTPM: 37.1
Std nTPM: 48.7
Median nTPM: 115.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 304.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 279.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 271.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 256.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 246.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 244.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 214.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 210.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 203.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 202.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 199.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 197.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 195.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 190.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 188.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 188.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 188.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 183.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 183.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 183.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 183.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 182.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 180.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 176.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 175.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 173.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 170.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 169.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 167.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 167.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 165.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 164.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 164.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 162.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 160.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 159.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 159.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 158.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 158.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 158.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 158.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 157.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 155.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 154.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 153.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 152.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 148.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 147.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 146.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 146.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 144.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 144.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 143.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 143.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 140.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 137.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 135.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 134.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 128.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 128.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 127.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 126.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 125.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 123.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 123.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 123.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 120.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 120.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 119.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 118.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 118.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 117.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 117.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 117.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 116.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 116.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 116.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 115.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 115.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 113.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 113.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 112.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 112.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 112.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 112.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 111.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 111.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 111.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 110.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 110.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 109.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 107.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 105.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 104.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 104.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 103.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 103.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 102.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 102.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 102.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 101.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 99.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 99.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 99.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 98.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 98.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 98.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 98.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 97.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 97.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 95.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 95.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 95.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 94.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 92.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 92.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 91.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 91.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 91.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 90.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 90.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 90.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 88.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 88.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 88.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 87.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 87.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 86.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 85.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 84.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 83.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 82.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 82.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 81.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 80.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 79.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 79.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 76.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 76.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 72.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 70.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 70.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 70.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 68.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 67.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 66.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 65.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 63.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 63.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 60.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 60.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 58.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 58.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 58.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 53.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 43.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 42.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 37.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

216.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 216.0
FF:10181-103D1 60 years, female 242.0
FF:10159-103A6 76 years, female 190.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 34.9
Samples: 4

Max nTPM: 37.9
Min nTPM: 30.1
Sample A Female 34.8
Sample B Female 36.8
Sample C Male 30.1
Sample D Male 37.9
Ventral spinal cord
nTPM: 34.1
Samples: 4

Max nTPM: 35.8
Min nTPM: 31.3
Sample A Female 34.5
Sample B Female 34.8
Sample C Male 31.3
Sample D Male 35.8

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