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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:930.8 nTPM
FANTOM5:1231.2 Scaled Tags Per Million
Pig:2783.6 nTPM
Mouse:418.1 nTPM
Allen mouse:8.2 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

930.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 444.8
2032 Female, age 42, unknown 562.1
2497 Male, age 66, unknown 469.2
2396 Male, age 61, right hemisphere 303.1
Centromedial thalamic nucleus
nTPM: 908.0
2279 Female, age 85, left hemisphere 1192.3
2401 Male, age 76, right hemisphere 623.7
Habenula
nTPM: 183.5
2252 Male, age 62, unknown 204.0
1957 Male, age 80, both hemispheres 194.6
2203 Male, age 61, left hemisphere 186.4
2276 Male, age 66, unknown 148.9
Lateral geniculate body
nTPM: 667.7
2575 Female, age 94, right hemisphere 1217.8
2841 Male, age 80, both hemispheres 878.8
2659 Male, age 66, unknown 792.4
2035 Female, age 72, unknown 641.4
1953 Male, age 62, unknown 550.4
2857 Male, age 74, right hemisphere 461.1
2399 Male, age 61, left hemisphere 454.7
2106 Female, age 67, right hemisphere 344.9
Lateral thalamic nuclei
nTPM: 535.3
2573 Female, age 94, left hemisphere 762.1
2661 Female, age 72, unknown 627.0
2577 Male, age 74, both hemispheres 578.0
2765 Female, age 67, both hemispheres 467.5
1903 Male, age 76, left hemisphere 241.8
Medial dorsal thalamic nucleus
nTPM: 372.0
2572 Female, age 94, right hemisphere 825.8
2660 Female, age 72, unknown 810.3
2576 Male, age 74, both hemispheres 485.6
1859 Male, age 76, both hemispheres 414.1
1930 Female, age 42, unknown 365.9
2283 Male, age 80, right hemisphere 349.1
2039 Female, age 72, unknown 277.7
1810 Male, age 48, unknown 271.1
2492 Male, age 75, right hemisphere 251.0
2402 Female, age 67, both hemispheres 224.0
2026 Male, age 62, unknown 214.6
2498 Male, age 66, unknown 181.8
1971 Male, age 61, right hemisphere 164.8
Medial geniculate body
nTPM: 526.6
2571 Male, age 75, right hemisphere 799.9
2217 Female, age 72, unknown 655.1
2650 Female, age 94, left hemisphere 585.6
2207 Male, age 80, right hemisphere 542.1
2657 Male, age 74, right hemisphere 458.3
2049 Male, age 76, both hemispheres 409.7
1811 Female, age 42, unknown 235.7
Nucleus reuniens
nTPM: 770.9
2210 Female, age 85, left hemisphere 1417.6
2205 Male, age 80, left hemisphere 701.6
2212 Female, age 67, left hemisphere 193.4
Nucleus rhomboideus
nTPM: 584.3
2280 Female, age 85, left hemisphere 1324.7
2206 Male, age 80, both hemispheres 261.7
2213 Female, age 67, left hemisphere 166.4
Posterior thalamic nucleus
nTPM: 612.4
2649 Female, age 94, both hemispheres 1520.0
2655 Male, age 74, right hemisphere 373.0
2266 Male, age 76, right hemisphere 363.2
2495 Female, age 67, right hemisphere 193.4
Pulvinar
nTPM: 468.6
2398 Male, age 61, left hemisphere 706.0
2724 Male, age 74, right hemisphere 538.9
1972 Male, age 62, unknown 516.0
2214 Male, age 76, right hemisphere 463.4
1932 Male, age 80, right hemisphere 444.1
1899 Female, age 42, unknown 433.7
1929 Male, age 48, unknown 426.5
2496 Female, age 67, right hemisphere 409.1
2582 Female, age 72, unknown 404.8
2499 Male, age 66, unknown 343.5
Subthalamic nucleus
nTPM: 930.8
2282 Male, age 61, both hemispheres 1442.4
2216 Male, age 48, unknown 1196.7
2056 Female, age 72, unknown 1160.0
2124 Male, age 62, unknown 1094.2
2275 Male, age 66, unknown 996.1
2779 Female, age 42, unknown 710.8
2658 Male, age 74, both hemispheres 627.3
2406 Female, age 72, unknown 219.1
Ventral posterolateral thalamic nucleus
nTPM: 583.4
2581 Female, age 72, unknown 890.6
2740 Male, age 76, right hemisphere 705.5
2578 Male, age 74, both hemispheres 582.1
2570 Male, age 75, right hemisphere 564.6
2397 Male, age 61, right hemisphere 498.9
2197 Male, age 80, both hemispheres 258.6
Ventral posteromedial thalamic nucleus
nTPM: 440.8
2127 Male, age 76, right hemisphere 557.6
2281 Male, age 75, right hemisphere 546.5
2653 Male, age 74, both hemispheres 504.8
2202 Male, age 61, left hemisphere 325.8
2758 Male, age 80, both hemispheres 269.5
Ventral thalamic nuclei
nTPM: 631.0
2580 Male, age 66, unknown 885.6
2291 Female, age 72, unknown 883.3
2858 Female, age 72, unknown 775.9
2652 Male, age 74, left hemisphere 696.3
2204 Male, age 80, both hemispheres 549.4
1845 Male, age 48, unknown 541.9
1860 Male, age 76, both hemispheres 523.2
2285 Male, age 62, unknown 432.5
1912 Female, age 42, unknown 390.6
Zona incerta
nTPM: 706.0
2663 Female, age 72, unknown 875.8
2822 Male, age 74, right hemisphere 826.4
2215 Male, age 66, unknown 758.0
2403 Male, age 62, unknown 729.4
2208 Male, age 80, right hemisphere 340.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1231.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1231.2
FF:10154-103A1 76 years, female 1231.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2783.6
Pig sample Sample description nTPM
Thalamus
nTPM: 2783.7
Samples: 4

Max nTPM: 7217.4
Min nTPM: 824.3
Sample A Female 824.3
Sample B Female 1492.0
Sample C Male 1600.9
Sample D Male 7217.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

418.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 418.2
Samples: 4

Max nTPM: 542.9
Min nTPM: 268.6
Sample A Male 268.6
Sample B Male 392.4
Sample C Female 542.9
Sample D Female 468.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 8.2
69201510 Antisense, RP_050317_03_A10, Mouse strain C57BL/6J (56 days, male) 8.9
69174034 Antisense, RP_050329_01_H11, Mouse strain C57BL/6J (56 days, male) 7.5

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