MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.3 nTPM
HPA Brain:92.6 nTPM
GTEx:82.3 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:45.3 nTPM
Mouse:74.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 92.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.2
2586 Male, age 75, left hemisphere 97.8
2828 Female, age 72, unknown 94.8
1827 Male, age 72, unknown 77.0
1870 Female, age 42, unknown 73.5
2666 Male, age 74, left hemisphere 73.2
2411 Female, age 72, unknown 65.1
1830 Male, age 51, unknown 60.7
1833 Male, age 53, unknown 57.5
2219 Male, age 76, both hemispheres 47.5
2019 Male, age 18, unknown 45.3
Dorsal raphe nucleus
nTPM: 81.9
2016 Female, age 72, unknown 91.5
1828 Male, age 53, unknown 91.1
2047 Male, age 72, unknown 90.0
2298 Female, age 72, unknown 73.5
2750 Male, age 76, both hemispheres 63.2
Inferior colliculus
nTPM: 92.6
1848 Female, age 42, unknown 110.3
2097 Female, age 72, unknown 87.8
1890 Male, age 53, unknown 87.3
2849 Male, age 72, unknown 84.9
Median raphe nucleus
nTPM: 57.0
2220 Male, age 76, midline 57.0
Periaquaductal grey, anterior
nTPM: 77.8
2502 Female, age 75, unknown 85.9
1795 Male, age 51, unknown 73.7
1947 Male, age 18, unknown 73.7
Periaquaductal grey, dorsal
nTPM: 82.0
1840 Male, age 53, unknown 94.4
2464 Female, age 72, unknown 84.9
2850 Male, age 76, both hemispheres 77.1
1831 Male, age 72, unknown 71.6
Periaquaductal grey, lateral
nTPM: 70.5
2053 Male, age 18, unknown 89.9
2140 Male, age 76, both hemispheres 76.0
2272 Male, age 74, both hemispheres 45.7
Pretectal area
nTPM: 72.4
1817 Female, age 42, unknown 86.8
1944 Female, age 72, unknown 82.4
1816 Male, age 51, unknown 81.4
2825 Male, age 18, unknown 81.0
2667 Female, age 75, unknown 76.3
2316 Male, age 76, right hemisphere 75.0
2224 Female, age 72, unknown 73.4
1815 Male, age 53, unknown 69.7
2407 Male, age 75, both hemispheres 62.3
2007 Male, age 72, unknown 56.9
2273 Male, age 74, both hemispheres 51.5
Red nucleus
nTPM: 73.5
2503 Female, age 72, unknown 90.6
1821 Female, age 72, unknown 85.8
1954 Female, age 42, unknown 85.7
2227 Male, age 72, unknown 82.9
2769 Male, age 72, unknown 80.3
2725 Female, age 75, unknown 73.9
2588 Male, age 74, left hemisphere 72.5
2823 Male, age 76, right hemisphere 71.2
1865 Male, age 51, unknown 68.8
1904 Male, age 53, unknown 64.0
2584 Male, age 75, left hemisphere 60.5
2785 Male, age 18, unknown 45.6
Substantia nigra
nTPM: 85.4
2699 Male, age 18, unknown 137.9
1916 Female, age 42, unknown 92.4
2241 Male, age 72, unknown 85.2
1851 Male, age 51, unknown 81.5
1941 Male, age 53, unknown 81.2
1889 Female, age 72, unknown 80.6
2665 Male, age 74, both hemispheres 77.9
2583 Male, age 75, right hemisphere 76.1
2409 Female, age 72, unknown 75.2
2590 Female, age 75, unknown 65.6
Superior colliculus
nTPM: 75.4
2664 Male, age 75, both hemispheres 97.1
1839 Male, age 51, unknown 83.1
2087 Female, age 72, unknown 81.2
2668 Female, age 75, unknown 79.0
2261 Male, age 18, unknown 74.5
2587 Male, age 74, left hemisphere 74.3
1796 Male, age 53, unknown 73.8
1995 Male, age 72, unknown 70.5
1913 Female, age 42, unknown 62.4
1895 Male, age 76, right hemisphere 57.8
Ventral tegmental area
nTPM: 75.1
2021 Male, age 53, unknown 85.6
1915 Female, age 42, unknown 80.3
2410 Female, age 72, unknown 76.4
1942 Male, age 51, unknown 74.5
2218 Male, age 76, both hemispheres 67.3
2223 Female, age 72, unknown 66.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 82.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.3
Samples: 139

Max nTPM: 158.5
Min nTPM: 22.2
Std nTPM: 30.3
Median nTPM: 79.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 158.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 153.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 150.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 147.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 147.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 141.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 139.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 136.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 134.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 132.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 132.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.3
FF:10158-103A5 76 years, female 115.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.3
Samples: 4

Max nTPM: 55.5
Min nTPM: 34.9
Sample A Female 34.9
Sample B Female 46.6
Sample C Male 44.1
Sample D Male 55.5
Midbrain
nTPM: 39.1
Samples: 4

Max nTPM: 45.5
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 45.5
Sample C Male 36.8
Sample D Male 37.6
Periaqueductal gray
nTPM: 44.3
Samples: 3

Max nTPM: 49.4
Min nTPM: 38.8
Sample B Female 49.4
Sample C Male 38.8
Sample D Male 44.7
Superior colliculi
nTPM: 36.9
Samples: 4

Max nTPM: 39.9
Min nTPM: 34.0
Sample A Female 34.0
Sample B Female 37.7
Sample C Male 36.1
Sample D Male 39.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 74.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 79.6
Min nTPM: 69.5
Sample A Male 74.4
Sample B Male 69.5
Sample C Female 79.6
Sample D Female 74.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
79544800 Antisense, RP_071018_01_C09, Mouse strain C57BL/6J (56 days, male) 0.4

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