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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:149.6 nTPM
HPA Brain:60.6 nTPM
GTEx:149.6 nTPM
FANTOM5:91.6 Scaled Tags Per Million
Pig:111.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 45.8
1981 Female, age 72, midline 78.9
2048 Male, age 55, midline 51.7
2816 Male, age 47, midline 35.3
2194 Female, age 79, both hemispheres 34.8
2565 Male, age 75, midline 28.1
Cervical spinal cord, dorsal horn
nTPM: 60.6
2173 Female, age 72, unknown 103.9
2296 Male, age 66, both hemispheres 103.4
2069 Male, age 47, both hemispheres 67.7
1877 Male, age 55, unknown 44.1
2297 Male, age 75, both hemispheres 22.3
2721 Male, age 90, both hemispheres 22.3
Cervical spinal cord, ventral horn
nTPM: 57.7
2098 Female, age 72, unknown 95.8
2809 Male, age 90, both hemispheres 60.4
2480 Male, age 75, both hemispheres 57.4
2068 Male, age 55, unknown 52.8
2295 Male, age 66, both hemispheres 47.7
2820 Female, age 79, both hemispheres 31.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 149.6
Samples: 159

Max nTPM: 288.4
Min nTPM: 50.6
Std nTPM: 55.4
Median nTPM: 142.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 288.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 287.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 277.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 275.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 271.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 268.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 261.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 250.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 242.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 238.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 237.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 236.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 236.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 236.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 232.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 230.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 228.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 226.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 226.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 225.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 221.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 216.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 216.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 208.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 206.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 206.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 206.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 205.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 204.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 204.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 202.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 202.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 201.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 198.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 198.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 197.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 194.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 192.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 190.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 189.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 188.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 187.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 186.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 185.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 184.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 181.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 180.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 176.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 175.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 173.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 173.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 171.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 171.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 168.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 166.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 165.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 164.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 163.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 161.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 160.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 157.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 157.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 156.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 156.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 155.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 155.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 155.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 152.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 151.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 150.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 150.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 150.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 148.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 147.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 146.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 144.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 144.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 143.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 143.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 142.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 142.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 142.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 141.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 140.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 138.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 138.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 136.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 135.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 134.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 134.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 134.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 133.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 133.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 133.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 132.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 131.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 129.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 128.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 128.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 125.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 124.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 123.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 122.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 119.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 118.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 118.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 116.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 116.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 116.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 115.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 115.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 115.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 115.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 113.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 112.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 112.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 110.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 105.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 105.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 105.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 104.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 102.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 101.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 101.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 101.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 99.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 99.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 98.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 97.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 94.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 94.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 93.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 92.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 92.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 92.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 90.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 88.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 87.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 87.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 86.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 86.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 83.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 81.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 79.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 74.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 73.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 69.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 68.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 67.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 66.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 66.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 65.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 64.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 62.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 58.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 55.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 50.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 91.6
FF:10159-103A6 76 years, female 91.7
FF:10181-103D1 60 years, female 91.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 111.4
Samples: 4

Max nTPM: 124.2
Min nTPM: 88.8
Sample A Female 88.8
Sample B Female 123.3
Sample C Male 124.2
Sample D Male 109.3
Ventral spinal cord
nTPM: 109.8
Samples: 4

Max nTPM: 140.6
Min nTPM: 97.2
Sample A Female 97.3
Sample B Female 104.2
Sample C Male 97.2
Sample D Male 140.6

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