Expression of COL3A1 in urothelial cancer

BLADDER UROTHELIAL CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

COL3A1 is not prognostic in Bladder Urothelial Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 88.11

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

826.0

Number of samples

169

Samples

Sample	Description	pTPM
TCGA-DK-A3IQ-01A	74 years, male, white, stage:Stage III, dead, 539 days	11020.3
TCGA-XF-AAN8-01A	74 years, female, white, stage:Stage III, dead, 118 days	8190.2
TCGA-XF-AAMJ-01A	70 years, male, asian, stage:Stage III, dead, 1670 days	5793.6
TCGA-FD-A5BZ-01A	77 years, female, white, stage:Stage IV, dead, 835 days	5681.5
TCGA-FD-A62S-01A	60 years, female, black or african american, stage:Stage III, dead, 406 days	4653.0
TCGA-DK-A1AB-01A	74 years, female, white, stage:Stage IV, dead, 508 days	3557.9
TCGA-BL-A13J-01A	65 years, male, white, stage:Stage IV, dead, 81 days	3421.6
TCGA-ZF-AA4R-01A	67 years, male, white, stage:Stage IV, dead, 1036 days	3236.9
TCGA-DK-A1A5-01A	79 years, male, white, stage:Stage II, dead, 65 days	2937.2
TCGA-FD-A3B7-01A	66 years, male, black or african american, stage:Stage III, dead, 122 days	2878.9
TCGA-XF-AAME-01A	64 years, female, white, stage:Stage II, dead, 2828 days	2604.2
TCGA-XF-AAMT-01A	75 years, female, white, stage:Stage IV, dead, 90 days	2508.0
TCGA-FD-A3SQ-01A	62 years, male, white, stage:Stage IV, dead, 1423 days	2478.8
TCGA-DK-A2HX-01A	80 years, female, white, stage:Stage IV, dead, 1420 days	2352.1
TCGA-FD-A3SO-01A	68 years, male, white, stage:Stage IV, dead, 168 days	2153.8
TCGA-SY-A9G0-01A	82 years, male, white, stage:Stage IV, dead, 1008 days	2109.9
TCGA-XF-A9SZ-01A	79 years, male, white, stage:Stage IV, dead, 859 days	1878.5
TCGA-DK-A3IN-01A	72 years, male, white, stage:Stage III, dead, 250 days	1817.2
TCGA-XF-A9SK-01A	65 years, male, white, stage:Stage IV, dead, 486 days	1812.2
TCGA-FD-A3B3-01A	74 years, female, white, stage:Stage III, dead, 974 days	1746.9
TCGA-XF-A9SP-01A	59 years, male, white, stage:Stage III, dead, 454 days	1705.9
TCGA-G2-A2EC-01A	58 years, female, black or african american, stage:Stage II, dead, 696 days	1694.7
TCGA-FD-A3SL-01A	60 years, male, white, stage:Stage IV, dead, 712 days	1639.6
TCGA-4Z-AA86-01A	66 years, male, black or african american, stage:Stage IV, dead, 311 days	1623.3
TCGA-XF-A9SV-01A	82 years, male, white, stage:Stage IV, dead, 388 days	1591.3
TCGA-XF-A9SL-01A	69 years, male, white, stage:Stage IV, dead, 2020 days	1499.9
TCGA-XF-A9T2-01A	54 years, male, white, stage:Stage III, dead, 575 days	1489.5
TCGA-XF-A9SW-01A	85 years, male, white, stage:Stage IV, dead, 362 days	1473.2
TCGA-XF-AAN4-01A	77 years, female, white, stage:Stage III, dead, 823 days	1426.9
TCGA-FD-A3SM-01A	70 years, male, white, stage:Stage IV, dead, 547 days	1325.9
TCGA-ZF-AA52-01A	70 years, male, white, stage:Stage III, dead, 1077 days	1283.7
TCGA-ZF-A9R9-01A	58 years, male, white, stage:Stage IV, dead, 864 days	1276.7
TCGA-4Z-AA7N-01A	65 years, male, white, stage:Stage III, dead, 1367 days	1253.1
TCGA-CU-A0YN-01A	60 years, male, white, stage:Stage III, dead, 393 days	1222.0
TCGA-BT-A20Q-01A	73 years, male, white, stage:Stage IV, dead, 593 days	1105.3
TCGA-HQ-A5NE-01A	57 years, male, stage:Stage III, dead, 370 days	1033.3
TCGA-BT-A2LB-01A	73 years, female, white, stage:Stage III, dead, 492 days	1013.0
TCGA-FD-A3SR-01A	68 years, male, white, stage:Stage IV, dead, 602 days	973.8
TCGA-4Z-AA82-01A	59 years, male, black or african american, stage:Stage IV, dead, 1556 days	971.9
TCGA-FD-A6TD-01A	77 years, male, white, stage:Stage III, dead, 386 days	949.0
TCGA-FD-A6TG-01A	73 years, male, white, stage:Stage IV, dead, 93 days	947.2
TCGA-BT-A3PK-01A	80 years, male, white, stage:Stage II, dead, 303 days	933.9
TCGA-G2-A2EO-01A	69 years, male, white, stage:Stage III, dead, 1804 days	930.3
TCGA-XF-A9SX-01A	63 years, female, white, stage:Stage IV, dead, 719 days	917.2
TCGA-E7-A97P-01A	73 years, male, asian, stage:Stage II, dead, 437 days	900.0
TCGA-GC-A3I6-01A	45 years, male, white, stage:Stage III, dead, 630 days	881.2
TCGA-FD-A3B4-01A	55 years, female, black or african american, stage:Stage III, dead, 510 days	873.1
TCGA-FD-A62P-01A	76 years, male, white, stage:Stage II, dead, 191 days	868.2
TCGA-FD-A6TF-01A	80 years, female, white, stage:Stage IV, dead, 69 days	849.8
TCGA-XF-A9T8-01A	64 years, male, white, stage:Stage III, dead, 418 days	842.3
TCGA-XF-A8HH-01A	61 years, female, white, stage:Stage IV, dead, 57 days	837.0
TCGA-BT-A20T-01A	63 years, male, white, stage:Stage IV, dead, 453 days	812.8
TCGA-FD-A5BT-01A	84 years, male, white, stage:Stage III, dead, 328 days	797.2
TCGA-ZF-AA54-01A	71 years, male, white, stage:Stage III, dead, 590 days	753.9
TCGA-FD-A3B5-01A	86 years, male, black or african american, stage:Stage IV, dead, 272 days	734.7
TCGA-XF-A9SU-01A	74 years, female, white, stage:Stage IV, dead, 182 days	694.5
TCGA-XF-AAN7-01A	60 years, male, white, stage:Stage IV, dead, 565 days	673.8
TCGA-DK-A3IU-01A	58 years, male, white, stage:Stage II, dead, 706 days	672.7
TCGA-XF-AAMX-01A	87 years, female, black or african american, stage:Stage III, dead, 206 days	669.8
TCGA-BT-A20U-01A	70 years, female, white, stage:Stage III, dead, 455 days	645.5
TCGA-BL-A13I-01A	57 years, female, white, stage:Stage III, dead, 223 days	640.3
TCGA-DK-A2I2-01A	63 years, female, white, stage:Stage IV, dead, 237 days	632.4
TCGA-G2-A2ES-01A	85 years, male, white, stage:Stage II, dead, 1004 days	593.0
TCGA-FD-A6TH-01A	63 years, male, white, stage:Stage IV, dead, 131 days	552.0
TCGA-BT-A20O-01A	75 years, male, white, stage:Stage III, dead, 370 days	551.1
TCGA-CU-A72E-01A	76 years, male, white, stage:Stage IV, dead, 413 days	548.4
TCGA-FD-A5BX-01A	82 years, male, white, stage:Stage IV, dead, 173 days	525.2
TCGA-FD-A5C0-01A	61 years, male, white, stage:Stage IV, dead, 550 days	510.9
TCGA-ZF-AA56-01A	79 years, female, white, stage:Stage III, dead, 259 days	506.3
TCGA-UY-A78M-01A	81 years, female, asian, stage:Stage IV, dead, 690 days	502.7
TCGA-BT-A20N-01A	72 years, male, stage:Stage III, dead, 795 days	498.7
TCGA-GU-A762-01A	87 years, male, white, stage:Stage IV, dead, 232 days	476.8
TCGA-2F-A9KO-01A	63 years, male, white, stage:Stage IV, dead, 734 days	473.9
TCGA-DK-A1A3-01A	60 years, male, white, stage:Stage IV, dead, 665 days	472.4
TCGA-BT-A20X-01A	56 years, male, white, stage:Stage IV, dead, 251 days	469.3
TCGA-FD-A62O-01A	74 years, male, white, stage:Stage IV, dead, 216 days	457.9
TCGA-FD-A43Y-01A	65 years, male, white, stage:Stage III, dead, 474 days	446.9
TCGA-GV-A40E-01A	75 years, male, white, stage:Stage II, dead, 261 days	441.6
TCGA-BL-A3JM-01A	62 years, male, white, stage:Stage III, dead, 205 days	435.8
TCGA-XF-AAMW-01A	79 years, female, white, stage:Stage IV, dead, 253 days	430.3
TCGA-5N-A9KI-01A	76 years, female, white, stage:Stage III, dead, 76 days	418.4
TCGA-FD-A3SJ-01A	59 years, male, white, stage:Stage IV, dead, 739 days	404.5
TCGA-UY-A78N-01A	80 years, male, white, stage:Stage IV, dead, 2641 days	387.2
TCGA-CF-A9FL-01A	85 years, male, asian, stage:Stage III, dead, 565 days	386.2
TCGA-BT-A0S7-01A	75 years, male, white, stage:Stage III, dead, 200 days	376.8
TCGA-XF-A9SJ-01A	83 years, male, white, stage:Stage IV, dead, 98 days	375.5
TCGA-FD-A3B6-01A	75 years, male, white, stage:Stage II, dead, 1005 days	371.9
TCGA-DK-A3IK-01A	87 years, male, white, stage:Stage IV, dead, 146 days	339.8
TCGA-XF-A8HF-01A	80 years, male, white, stage:Stage III, dead, 2954 days	338.2
TCGA-K4-A5RI-01A	67 years, female, white, stage:Stage III, dead, 356 days	318.0
TCGA-CU-A0YR-01A	83 years, male, white, stage:Stage IV, dead, 460 days	315.7
TCGA-FD-A5BV-01A	47 years, female, white, stage:Stage III, dead, 163 days	292.6
TCGA-CU-A0YO-01A	84 years, male, white, stage:Stage IV, dead, 149 days	287.0
TCGA-ZF-A9R0-01A	82 years, male, white, stage:Stage III, dead, 680 days	278.9
TCGA-2F-A9KW-01A	67 years, female, white, stage:Stage III, dead, 254 days	278.5
TCGA-DK-AA6L-01A	48 years, male, white, stage:Stage IV, dead, 1163 days	269.8
TCGA-4Z-AA7R-01A	73 years, male, black or african american, stage:Stage IV, dead, 522 days	267.9
TCGA-BT-A20W-01A	71 years, male, white, stage:Stage II, dead, 254 days	264.2
TCGA-GU-A42Q-01A	67 years, male, white, stage:Stage III, dead, 344 days	260.0
TCGA-FD-A6TI-01A	73 years, male, white, stage:Stage IV, dead, 294 days	238.2
TCGA-GV-A3JV-01A	66 years, male, white, stage:Stage IV, dead, 434 days	237.7
TCGA-E7-A3X6-01A	70 years, male, white, stage:Stage II, dead, 904 days	234.0
TCGA-XF-AAN2-01A	73 years, male, white, stage:Stage II, dead, 1869 days	227.6
TCGA-FD-A3N5-01A	69 years, male, black or african american, stage:Stage II, dead, 685 days	226.9
TCGA-BT-A0YX-01A	70 years, female, white, stage:Stage III, dead, 400 days	225.9
TCGA-ZF-AA4N-01A	74 years, male, white, stage:Stage II, dead, 88 days	224.1
TCGA-DK-A3IL-01A	79 years, female, white, stage:Stage IV, dead, 413 days	220.8
TCGA-5N-A9KM-01A	73 years, female, white, stage:Stage III, dead, 530 days	220.8
TCGA-C4-A0EZ-01A	69 years, female, stage:Stage IV, dead, 273 days	212.7
TCGA-BT-A3PH-01A	76 years, male, white, stage:Stage IV, dead, 142 days	206.7
TCGA-FJ-A871-01A	49 years, male, white, stage:Stage III, dead, 272 days	195.2
TCGA-FD-A3SS-01A	66 years, male, white, stage:Stage IV, dead, 391 days	195.1
TCGA-E7-A541-01A	66 years, male, white, stage:Stage II, dead, 778 days	193.6
TCGA-GU-A767-01A	81 years, male, white, stage:Stage IV, dead, 144 days	189.3
TCGA-ZF-A9R3-01A	53 years, female, white, stage:Stage II, dead, 949 days	178.9
TCGA-4Z-AA7S-01A	66 years, male, black or african american, stage:Stage III, dead, 1064 days	178.9
TCGA-GU-AATQ-01A	68 years, male, white, stage:Stage III, dead, 213 days	174.2
TCGA-BT-A2LD-01A	78 years, female, white, stage:Stage IV, dead, 623 days	173.3
TCGA-CU-A5W6-01A	70 years, male, white, stage:Stage III, dead, 56 days	160.5
TCGA-YC-A9TC-01A	71 years, male, white, stage:Stage IV, dead, 20 days	160.0
TCGA-ZF-A9RD-01A	75 years, female, white, stage:Stage IV, dead, 408 days	153.6
TCGA-XF-AAN0-01A	68 years, male, white, stage:Stage IV, dead, 1718 days	152.7
TCGA-DK-AA6W-01A	78 years, male, white, stage:Stage II, dead, 415 days	151.2
TCGA-2F-A9KR-01A	59 years, female, stage:Stage III, dead, 3183 days	151.0
TCGA-DK-A3X2-01A	85 years, male, white, stage:Stage IV, dead, 547 days	133.3
TCGA-C4-A0F7-01A	77 years, male, stage:Stage IV, dead, 62 days	132.6
TCGA-GU-AATO-01A	75 years, male, white, stage:Stage IV, dead, 324 days	126.3
TCGA-G2-A3IE-01A	51 years, male, white, stage:Stage II, dead, 612 days	120.0
TCGA-K4-A4AC-01A	83 years, male, white, stage:Stage II, dead, 278 days	118.0
TCGA-XF-AAMZ-01A	81 years, female, white, stage:Stage IV, dead, 1348 days	104.6
TCGA-UY-A78K-01A	60 years, male, white, stage:Stage IV, dead, 536 days	99.9
TCGA-GU-A42R-01A	68 years, male, white, stage:Stage IV, dead, 577 days	91.2
TCGA-ZF-AA4T-01A	65 years, male, white, stage:Stage IV, dead, 599 days	88.9
TCGA-XF-A9SH-01A	65 years, female, asian, stage:Stage II, dead, 1971 days	88.1
TCGA-XF-AAMH-01A	80 years, male, white, stage:Stage IV, dead, 344 days	82.9
TCGA-4Z-AA81-01A	80 years, male, white, stage:Stage II, dead, 1270 days	80.6
TCGA-XF-A9ST-01A	68 years, male, white, stage:Stage III, dead, 128 days	80.4
TCGA-BT-A20J-01A	75 years, male, white, stage:Stage II, dead, 579 days	77.8
TCGA-BT-A20P-01A	81 years, female, white, stage:Stage III, dead, 544 days	74.1
TCGA-GU-A42P-01A	72 years, male, white, stage:Stage IV, dead, 332 days	72.9
TCGA-GC-A3BM-01A	70 years, male, white, stage:Stage II, dead, 651 days	70.7
TCGA-E7-A4XJ-01A	66 years, male, asian, stage:Stage II, dead, 68 days	70.4
TCGA-ZF-A9RE-01A	78 years, female, white, stage:Stage II, dead, 106 days	68.6
TCGA-2F-A9KP-01A	66 years, male, white, stage:Stage IV, dead, 364 days	65.2
TCGA-G2-A2EL-01A	77 years, male, white, stage:Stage II, dead, 819 days	63.4
TCGA-CF-A47T-01A	58 years, female, asian, stage:Stage II, dead, 385 days	58.2
TCGA-G2-A3IB-01A	66 years, male, black or african american, stage:Stage II, dead, 220 days	53.0
TCGA-S5-A6DX-01A	83 years, male, white, stage:Stage IV, dead, 56 days	52.3
TCGA-4Z-AA7Q-01A	79 years, male, white, stage:Stage III, dead, 510 days	51.8
TCGA-XF-A8HI-01A	57 years, female, white, stage:Stage IV, dead, 544 days	50.5
TCGA-HQ-A5ND-01A	78 years, male, stage:Stage IV, dead, 274 days	49.7
TCGA-E5-A4TZ-01A	64 years, male, white, stage:Stage IV, dead, 467 days	49.4
TCGA-4Z-AA80-01A	73 years, male, white, stage:Stage II, dead, 19 days	48.7
TCGA-XF-AAN1-01A	75 years, female, stage:Stage III, dead, 941 days	44.2
TCGA-XF-A8HG-01A	69 years, male, white, stage:Stage III, dead, 467 days	39.4
TCGA-XF-A8HC-01A	79 years, male, asian, stage:Stage IV, dead, 200 days	33.8
TCGA-DK-A3IM-01A	76 years, male, white, stage:Stage III, dead, 248 days	32.8
TCGA-GV-A3QH-01A	67 years, male, white, stage:Stage II, dead, 258 days	26.7
TCGA-ZF-AA5N-01A	62 years, female, white, stage:Stage IV, dead, 168 days	26.5
TCGA-ZF-A9RN-01A	67 years, female, white, stage:Stage III, dead, 615 days	25.9
TCGA-BT-A20V-01A	59 years, female, black or african american, stage:Stage IV, dead, 154 days	22.8
TCGA-GV-A3QF-01A	79 years, male, white, stage:Stage IV, dead, 617 days	21.2
TCGA-G2-AA3C-01A	66 years, male, white, stage:Stage IV, dead, 211 days	20.4
TCGA-DK-AA6Q-01A	61 years, female, white, stage:Stage IV, dead, 413 days	16.5
TCGA-FJ-A3ZE-01A	65 years, male, white, stage:Stage IV, dead, 324 days	15.9
TCGA-XF-AAML-01A	75 years, male, white, stage:Stage II, dead, 232 days	14.4
TCGA-DK-AA75-01A	82 years, male, white, stage:Stage III, dead, 340 days	13.9
TCGA-FJ-A3Z9-01A	72 years, male, white, stage:'--, dead, 385 days	13.6
TCGA-ZF-AA4U-01A	70 years, male, white, stage:Stage III, dead, 262 days	5.9
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UROTHELIAL CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA007583	Antibody CAB016766	Antibody CAB059993
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Urothelial carcinoma, Low grade
Urothelial carcinoma, High grade
Urothelial carcinoma, Low grade Urothelial carcinoma, High grade
Urothelial carcinoma, NOS