MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.3 nTPM
HPA Brain:155.2 nTPM
GTEx:38.3 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:241.9 nTPM
Mouse:494.4 nTPM
Allen mouse:17.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 155.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.6
2219 Male, age 76, both hemispheres 98.6
2411 Female, age 72, unknown 87.3
2666 Male, age 74, left hemisphere 73.7
1827 Male, age 72, unknown 73.2
2019 Male, age 18, unknown 68.9
1833 Male, age 53, unknown 62.6
1870 Female, age 42, unknown 61.1
1830 Male, age 51, unknown 60.5
2828 Female, age 72, unknown 48.6
2586 Male, age 75, left hemisphere 41.7
Dorsal raphe nucleus
nTPM: 100.8
2298 Female, age 72, unknown 137.5
2750 Male, age 76, both hemispheres 112.0
2047 Male, age 72, unknown 104.9
1828 Male, age 53, unknown 89.2
2016 Female, age 72, unknown 60.4
Inferior colliculus
nTPM: 83.9
2097 Female, age 72, unknown 98.1
1848 Female, age 42, unknown 88.5
1890 Male, age 53, unknown 78.6
2849 Male, age 72, unknown 70.4
Median raphe nucleus
nTPM: 155.2
2220 Male, age 76, midline 155.2
Periaquaductal grey, anterior
nTPM: 64.3
2502 Female, age 75, unknown 66.8
1947 Male, age 18, unknown 65.2
1795 Male, age 51, unknown 61.0
Periaquaductal grey, dorsal
nTPM: 66.6
1840 Male, age 53, unknown 79.8
2850 Male, age 76, both hemispheres 65.6
1831 Male, age 72, unknown 62.8
2464 Female, age 72, unknown 58.3
Periaquaductal grey, lateral
nTPM: 51.8
2140 Male, age 76, both hemispheres 65.0
2053 Male, age 18, unknown 49.1
2272 Male, age 74, both hemispheres 41.2
Pretectal area
nTPM: 76.7
1817 Female, age 42, unknown 113.1
2667 Female, age 75, unknown 104.2
1944 Female, age 72, unknown 98.0
2224 Female, age 72, unknown 97.8
2007 Male, age 72, unknown 96.7
1816 Male, age 51, unknown 73.7
1815 Male, age 53, unknown 69.3
2825 Male, age 18, unknown 66.3
2316 Male, age 76, right hemisphere 59.7
2407 Male, age 75, both hemispheres 36.2
2273 Male, age 74, both hemispheres 28.3
Red nucleus
nTPM: 57.4
1821 Female, age 72, unknown 87.0
1954 Female, age 42, unknown 72.6
2785 Male, age 18, unknown 65.6
2823 Male, age 76, right hemisphere 64.7
2227 Male, age 72, unknown 61.4
2769 Male, age 72, unknown 59.3
1904 Male, age 53, unknown 54.0
2584 Male, age 75, left hemisphere 53.9
2503 Female, age 72, unknown 53.0
1865 Male, age 51, unknown 48.7
2588 Male, age 74, left hemisphere 43.1
2725 Female, age 75, unknown 25.9
Substantia nigra
nTPM: 73.5
1916 Female, age 42, unknown 104.0
1889 Female, age 72, unknown 100.8
1941 Male, age 53, unknown 92.9
2665 Male, age 74, both hemispheres 86.2
1851 Male, age 51, unknown 78.6
2241 Male, age 72, unknown 75.5
2699 Male, age 18, unknown 61.2
2409 Female, age 72, unknown 59.4
2590 Female, age 75, unknown 39.7
2583 Male, age 75, right hemisphere 36.9
Superior colliculus
nTPM: 65.2
2668 Female, age 75, unknown 141.5
1895 Male, age 76, right hemisphere 94.4
2087 Female, age 72, unknown 82.7
1796 Male, age 53, unknown 66.1
1839 Male, age 51, unknown 64.0
2261 Male, age 18, unknown 58.7
2587 Male, age 74, left hemisphere 39.6
1913 Female, age 42, unknown 37.7
1995 Male, age 72, unknown 34.4
2664 Male, age 75, both hemispheres 32.8
Ventral tegmental area
nTPM: 88.1
2218 Male, age 76, both hemispheres 130.1
2410 Female, age 72, unknown 101.7
1915 Female, age 42, unknown 90.0
1942 Male, age 51, unknown 86.0
2223 Female, age 72, unknown 61.4
2021 Male, age 53, unknown 59.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.3
Samples: 139

Max nTPM: 238.5
Min nTPM: 1.3
Std nTPM: 40.8
Median nTPM: 19.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 238.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 184.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 147.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 138.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 130.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 127.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 118.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 114.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 107.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 107.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 103.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 241.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 194.3
Samples: 4

Max nTPM: 314.0
Min nTPM: 57.0
Sample A Female 281.2
Sample B Female 125.0
Sample C Male 314.0
Sample D Male 57.0
Midbrain
nTPM: 242.0
Samples: 4

Max nTPM: 395.3
Min nTPM: 57.1
Sample A Female 57.1
Sample B Female 145.2
Sample C Male 395.3
Sample D Male 370.2
Periaqueductal gray
nTPM: 172.9
Samples: 3

Max nTPM: 244.7
Min nTPM: 131.5
Sample B Female 131.5
Sample C Male 244.7
Sample D Male 142.6
Superior colliculi
nTPM: 239.4
Samples: 4

Max nTPM: 350.6
Min nTPM: 93.9
Sample A Female 350.6
Sample B Female 93.9
Sample C Male 280.4
Sample D Male 232.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 494.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 494.4
Samples: 4

Max nTPM: 509.9
Min nTPM: 471.0
Sample A Male 471.0
Sample B Male 500.6
Sample C Female 509.9
Sample D Female 496.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.3
70429327 Antisense, RP_050614_01_D12, Mouse strain C57BL/6J (56 days, male) 17.3

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