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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:128.2 nTPM
HPA Brain:45.1 nTPM
GTEx:128.2 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:26.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.1
Sample id Sample description nTPM
Amygdala
nTPM: 45.1
2695 Female, age 67, right hemisphere 51.0
2814 Male, age 76, right hemisphere 50.7
2514 Male, age 75, right hemisphere 46.9
1987 Female, age 91, left hemisphere 42.8
2517 Female, age 94, left hemisphere 34.1
Basal amygdala
nTPM: 40.5
2609 Male, age 75, right hemisphere 44.3
1955 Male, age 76, both hemispheres 42.6
2110 Male, age 80, left hemisphere 42.3
2243 Female, age 91, right hemisphere 40.3
2685 Female, age 94, left hemisphere 40.3
2827 Female, age 67, right hemisphere 33.1
Central amygdala
nTPM: 42.6
1905 Male, age 76, both hemispheres 45.8
2515 Male, age 75, right hemisphere 43.3
2826 Female, age 94, left hemisphere 43.0
2239 Male, age 80, left hemisphere 41.6
2701 Female, age 91, right hemisphere 39.5
Corticomedial amygdala
nTPM: 41.8
2428 Male, age 75, right hemisphere 50.7
2829 Male, age 80, left hemisphere 45.2
2429 Female, age 94, left hemisphere 41.8
2240 Male, age 76, both hemispheres 40.4
2242 Female, age 91, right hemisphere 38.6
2535 Female, age 67, right hemisphere 33.9
Lateral amygdala
nTPM: 40.3
2516 Male, age 75, right hemisphere 47.5
1883 Male, age 76, both hemispheres 45.1
2256 Male, age 80, left hemisphere 38.5
2534 Female, age 94, left hemisphere 38.5
2830 Female, age 67, right hemisphere 36.8
2255 Female, age 91, right hemisphere 35.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 128.2
Samples: 152

Max nTPM: 325.3
Min nTPM: 71.8
Std nTPM: 40.4
Median nTPM: 121.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 325.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 304.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 293.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 284.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 272.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 242.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 210.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 191.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 188.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 187.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 181.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 170.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 164.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 163.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 158.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 157.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 155.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 155.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 154.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 151.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 150.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 150.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 150.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 150.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 149.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 149.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 149.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 148.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 147.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 146.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 145.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 144.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 142.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 140.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 139.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 138.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 138.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 137.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 137.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 137.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 137.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 137.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 134.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 134.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 132.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 132.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 132.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 131.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 130.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 128.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 128.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 128.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 127.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 127.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 127.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 126.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 126.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 126.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 126.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 125.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 124.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 124.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 124.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 124.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 122.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 122.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 122.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 122.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 121.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 121.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 121.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 121.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 121.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 120.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 119.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 119.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 119.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 119.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 119.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 119.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 118.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 118.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 118.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 116.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 115.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 115.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 115.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 114.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 114.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 114.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 113.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 113.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 112.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 111.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 110.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 110.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 110.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 109.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 109.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 109.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 107.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 107.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 107.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 105.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 104.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 104.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 103.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 103.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 103.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 102.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 102.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 102.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 101.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 100.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 99.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 99.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 99.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 98.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 97.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 96.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 96.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 96.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 95.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 94.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 93.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 92.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 92.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 91.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 90.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 89.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 88.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 88.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 87.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 85.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 76.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 71.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 43.9
FF:10151-102I7 76 years, female 43.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.5
Pig sample Sample description nTPM
Amygdala
nTPM: 26.5
Samples: 4

Max nTPM: 28.5
Min nTPM: 24.2
Sample A Female 28.5
Sample B Female 27.2
Sample C Male 26.0
Sample D Male 24.2

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