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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:151.3 nTPM
FANTOM5:223.5 Scaled Tags Per Million
Pig:134.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043028Antibody CAB009968
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 151.3
Samples: 246

Max nTPM: 481.3
Min nTPM: 59.7
Std nTPM: 41.2
Median nTPM: 148.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 481.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 260.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 257.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 241.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 228.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 227.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 225.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 225.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 219.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 219.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 214.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 213.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 211.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 210.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 209.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 209.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 208.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 208.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 207.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 205.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 204.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 204.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 204.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 202.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 200.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 197.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 197.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 197.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 196.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 195.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 193.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 192.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 191.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 191.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 191.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 189.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 189.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 188.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 188.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 187.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 186.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 186.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 185.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 184.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 181.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 181.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 180.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 179.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 178.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 178.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 178.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 177.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 177.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 176.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 175.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 174.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 173.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 173.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 172.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 171.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 171.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 170.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 170.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 170.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 170.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 170.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 169.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 169.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 169.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 167.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 167.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 167.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 166.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 166.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 165.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 165.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 164.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 164.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 163.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 163.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 163.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 162.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 162.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 161.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 161.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 160.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 160.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 159.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 159.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 159.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 158.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 158.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 158.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 156.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 156.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 156.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 156.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 155.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 155.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 154.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 154.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 154.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 154.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 154.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 153.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 153.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 153.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 153.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 153.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 153.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 152.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 152.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 152.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 151.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 151.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 150.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 150.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 150.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 150.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 150.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 149.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 149.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 148.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 148.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 148.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 148.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 147.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 147.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 146.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 146.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 146.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 145.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 145.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 144.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 144.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 144.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 144.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 144.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 144.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 143.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 143.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 143.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 142.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 141.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 141.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 141.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 140.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 140.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 139.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 139.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 139.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 139.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 139.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 138.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 138.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 137.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 137.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 137.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 137.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 136.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 136.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 136.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 135.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 135.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 135.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 135.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 134.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 133.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 133.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 133.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 132.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 132.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 131.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 131.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 129.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 129.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 129.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 128.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 128.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 128.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 127.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 127.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 127.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 126.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 126.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 126.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 125.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 125.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 123.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 122.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 122.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 122.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 119.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 118.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 118.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 118.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 118.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 117.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 116.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 116.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 115.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 114.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 113.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 113.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 113.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 113.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 113.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 113.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 112.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 112.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 112.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 111.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 111.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 110.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 110.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 109.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 109.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 109.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 109.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 109.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 108.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 106.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 106.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 106.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 105.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 104.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 102.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 102.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 101.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 99.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 97.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 95.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 95.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 94.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 94.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 94.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 93.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 90.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 89.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 87.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 83.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 83.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 78.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 73.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 70.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 59.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

223.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 223.5
FF:10164-103B2 76 years, female 223.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.0
Pig sample Sample description nTPM
Caudate
nTPM: 134.0
Samples: 4

Max nTPM: 136.3
Min nTPM: 131.1
Sample A Female 136.3
Sample B Female 131.1
Sample C Male 135.8
Sample D Male 132.8

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