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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:568.9 nTPM
FANTOM5:168.2 Scaled Tags Per Million
Pig:42.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035010
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

568.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 568.9
Samples: 246

Max nTPM: 1700.5
Min nTPM: 261.6
Std nTPM: 179.9
Median nTPM: 539.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1700.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1260.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1258.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1238.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1172.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1123.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1030.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 996.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 984.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 959.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 912.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 881.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 866.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 862.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 854.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 848.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 826.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 807.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 802.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 801.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 795.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 794.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 771.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 771.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 769.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 752.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 749.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 748.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 744.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 742.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 737.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 729.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 729.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 718.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 718.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 711.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 709.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 703.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 703.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 699.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 698.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 693.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 686.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 682.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 677.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 676.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 668.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 666.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 664.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 662.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 662.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 661.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 656.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 656.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 656.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 656.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 654.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 653.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 649.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 645.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 638.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 637.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 631.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 629.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 629.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 627.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 621.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 618.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 607.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 606.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 606.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 606.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 604.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 603.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 603.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 600.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 598.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 595.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 593.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 593.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 590.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 589.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 589.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 588.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 588.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 588.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 588.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 587.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 585.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 580.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 577.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 576.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 573.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 572.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 569.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 569.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 563.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 561.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 559.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 558.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 558.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 557.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 556.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 556.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 555.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 555.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 554.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 554.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 554.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 553.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 553.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 549.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 548.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 547.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 545.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 544.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 544.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 544.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 543.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 542.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 542.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 539.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 539.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 539.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 538.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 537.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 536.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 533.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 530.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 530.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 525.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 525.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 522.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 522.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 522.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 516.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 513.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 511.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 511.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 510.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 509.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 508.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 506.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 505.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 505.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 504.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 503.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 502.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 500.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 499.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 498.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 496.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 493.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 493.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 492.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 492.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 489.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 489.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 488.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 487.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 486.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 486.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 486.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 483.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 482.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 480.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 480.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 479.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 478.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 477.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 476.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 475.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 475.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 474.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 473.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 473.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 472.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 472.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 470.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 468.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 467.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 466.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 465.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 465.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 465.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 463.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 462.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 461.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 461.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 460.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 459.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 456.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 454.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 452.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 448.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 446.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 444.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 444.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 442.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 442.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 440.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 439.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 437.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 434.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 433.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 431.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 429.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 427.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 425.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 425.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 423.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 423.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 418.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 416.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 414.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 413.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 412.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 409.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 409.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 409.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 408.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 401.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 401.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 400.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 397.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 393.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 385.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 382.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 381.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 380.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 378.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 375.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 370.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 363.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 354.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 345.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 331.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 325.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 325.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 315.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 314.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 308.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 288.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 275.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 270.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 261.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 168.2
FF:10164-103B2 76 years, female 168.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.3
Pig sample Sample description nTPM
Caudate
nTPM: 42.4
Samples: 4

Max nTPM: 48.1
Min nTPM: 38.7
Sample A Female 38.7
Sample B Female 43.1
Sample C Male 48.1
Sample D Male 39.5

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