We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATP5ME
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ATP5ME
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:424.3 nTPM
HPA:424.3 nTPM
GTEx:335.4 nTPM
FANTOM5:113.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035010
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.3
overview
Male, age 65
Small intestine sample 232
nTPM: 412.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 465.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 348.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 470.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 335.4
Samples: 187

Max nTPM: 704.3
Min nTPM: 108.2
Std nTPM: 121.2
Median nTPM: 304.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 704.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 690.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 647.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 641.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 610.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 608.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 599.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 598.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 577.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 567.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 560.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 552.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 545.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 535.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 527.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 527.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 522.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 520.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 516.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 503.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 502.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 498.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 497.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 485.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 481.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 476.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 476.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 473.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 470.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 465.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 460.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 460.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 458.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 456.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 454.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 448.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 447.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 447.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 441.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 440.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 438.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 437.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 433.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 431.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 431.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 430.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 425.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 424.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 412.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 410.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 408.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 406.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 399.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 399.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 396.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 389.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 381.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 375.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 372.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 370.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 367.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 359.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 358.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 352.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 352.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 349.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 348.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 347.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 345.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 345.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 342.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 341.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 341.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 340.9
GTEX-1192X-2526-SM-59868 50-59 years, male 338.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 337.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 337.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 337.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 336.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 330.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 330.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 328.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 328.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 325.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 321.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 320.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 319.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 319.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 316.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 315.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 315.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 307.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 304.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 304.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 302.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 301.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 301.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 301.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 298.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 298.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 298.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 298.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 297.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 295.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 293.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 292.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 291.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 289.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 288.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 285.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 285.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 283.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 283.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 282.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 279.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 278.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 277.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 275.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 275.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 272.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 270.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 270.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 268.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 266.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 266.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 266.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 261.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 259.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 259.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 258.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 256.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 256.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 254.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 253.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 252.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 251.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 246.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 246.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 241.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 241.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 241.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 238.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 238.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 238.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 237.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 237.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 236.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 233.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 233.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 232.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 231.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 231.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 231.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 230.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 228.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 226.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 216.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 216.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 215.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 214.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 211.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 211.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 208.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 208.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 208.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 204.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 204.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 203.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 197.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 197.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 196.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 195.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 193.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 192.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 186.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 178.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 177.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 177.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 176.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 174.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 172.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 172.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 166.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 161.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 158.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 140.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 108.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 113.5
FF:10024-101D6 15,40,85 years, mixed 113.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org